barSeed - Barley Seed Development Database

Probe CUST_19254_PI390587928

Source Contig U35_50489

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_19254_PI390587928	Hv_44K_v2	GGTATGGTATAGTATTGGGGATACATCTTATACCGGCTATCATCTGTAACTGTTGTATTA	292	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_61702.2	1840	7e-23	1763 - 1822	98	59 / 60	plus	ABC16501
MLOC	MLOC_61702.3	1337	7e-23	1241 - 1300	98	59 / 60	plus	ABC16501
MLOC	MLOC_61702.1	3867	7e-23	1741 - 1800	98	59 / 60	plus	ABC08541 ABC16501
JLOC1	JLOC1_40333.1	4033	4e-23	1823 - 1882	98	59 / 60	minus
JLOC1	JLOC1_40332.1	2970	4e-23	1712 - 1771	98	59 / 60	plus
Harvest21	ABC52655	378	3e-25	293 - 352	100	60 / 60	plus
Harvest35	U35_50489	378	3e-25	293 - 352	100	60 / 60	plus

Contig Sequence (378 bp)

>U35_50489 378 Hv_44K_v2
CATGGTGATGAAAACGGCTACGCGTCTGAAGGAATTCCTCTTAGATCCGCTGCTGAAGGC
CTCCCTCTGAGGTCACCAAGGGCAGCAGAATAATTTTGACCAACTTGAAATGCTCAGTTA
TCCTTGTGGCCATGGTTGGCATTCTTTCATTCTATCCAGCCTGTAGATTGTACTTTAGGG
CTCTAAACAGGAAAAGGCTCGTTCCCCCTTGTAGTTTTGGAGGAACCGGTAGAGTATTGG
GGATATATATGTCTTATACATCAAGAGTTTTTCATGTTTCTTTTGAGGAACCGGTATGGT
ATAGTATTGGGGATACATCTTATACCGGCTATCATCTGTAACTGTTGTATTATTTGAAAA
TAGAGAAAGAATCTGAAG

Homology of Contig U35_50489 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None