barSeed - Barley Seed Development Database

Probe CUST_19243_PI390587928

Source Contig U35_48178

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_19243_PI390587928	Hv_44K_v2	CCTTGTAGTGACAAATGTTTTGACTCTTGGCGAATAAACAATGACATCAATTGAATGTTC	17	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_59803.1	2053	2e-24	1986 - 2045	100	60 / 60	plus	ABC47164
Harvest35	U35_48178	315	3e-25	18 - 77	100	60 / 60	minus

Contig Sequence (315 bp)

>U35_48178 315 Hv_44K_v2
TTTTTTTTTTTTTTTTTGAACATTCAATTGATGTCATTGTTTATTCGCCAAGAGTCAAAA
CATTTGTCACTACAAGGTACTAAAATATTTGGAAAATACAAGAAAATTACAAGACCAACG
CAGTGATTAAATACACTAAAATGTTTGGAATGGGAAATCATTTGCAAGTTAGCAAACAGA
TAACAAATGAGGAAAAATCAACATGGTTGATCGTGTCCGACTCCGACTAGCATTTGGGAA
GATCCGATGGCGGTTGTTGTAGCTTCTGGTTCGGCAGGCTCCCGTCTAGTACCAGCCATG
CCATTCTTAGCCCCC

Homology of Contig U35_48178 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None