- Probe CUST_19241_PI390587928
- Source Contig U35_50494
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_19241_PI390587928 | Hv_44K_v2 | CAAGGCTTTGTTTTGTTTGCTGCTTTCAATATACTGCCCGCTATTTAGGTTTGCAAAAAA | 8 | GeneList: green MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.167 | 1.100 | 1.163 | 0.948 | 0.462 | 0.401 |
| Raw | 31570.333 | 45645.767 | 43328.700 | 55043.933 | 9516.573 | 8987.353 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| Harvest21 | ABC52661 | 361 | 3e-25 | 9 - 68 | 100 | 60 / 60 | minus | ABC52661 |
| Harvest35 | U35_50494 | 361 | 3e-25 | 9 - 68 | 100 | 60 / 60 | minus | |
| Harvest35 | U35_589 | 1357 | 6e-22 | 1284 - 1343 | 97 | 58 / 60 | plus |
Contig Sequence (361 bp)
>U35_50494 361 Hv_44K_v2 TTTTTTTTTTTTTTGCAAACCTAAATAGCGGGCAGTATATTGAAAGCAGCAAACAAAACA AAGCCTTGGGGGAAAACAGGCCCCCTTCCAAAAAACTCAAAAGGGGCTCATCAACAAATC CCCTAAGCAAAAAGTAAATAGTAACTCAAGCTGAAAGTACCAGGGATACAAGGCTGCCTT ATAACAGTCAAAAACTTGACGGTCATTACAACCTCTTCGGCCAGAAAAACTCCTACGCAT ATCCGGAAAACCCGGCCTGGATCTTGAAAACCCTGAAAGTTCCATCGGGGTACCCGGGGA AAAGGGGGTTTCCGTCCGCGCTCCAGTTCAAGTTTGGGCAAAACAGCATCTGGTTCTTGG A
Homology of Contig U35_50494 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |