barSeed - Barley Seed Development Database

Probe CUST_19234_PI390587928

Source Contig U35_48184

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_19234_PI390587928	Hv_44K_v2	GATCCCCCTCACTTGATCAATTCGCTTTATCTTAATTATCATCAATAAGTTTCGGTTCAT	23	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK357890	2316	2e-24	2136 - 2195	100	60 / 60	plus	ABC02949 ABC03533
MLOC	MLOC_14696.4	1690	2e-24	1540 - 1599	100	60 / 60	plus	ABC03533
MLOC	MLOC_14696.5	1693	2e-24	1543 - 1602	100	60 / 60	plus	ABC03533
MLOC	MLOC_14696.3	1690	2e-24	1542 - 1601	100	60 / 60	plus	ABC03533
MLOC	MLOC_14696.6	1474	2e-24	1197 - 1256	100	60 / 60	plus	ABC03533
MLOC	MLOC_14696.2	2907	2e-24	1979 - 2038	100	60 / 60	plus	ABC03533
JLOC1	JLOC1_10037.1	2039	8e-25	1665 - 1724	100	60 / 60	plus
Harvest21	ABC03533	1751	3e-25	1535 - 1594	100	60 / 60	plus	ABC03533
Harvest35	U35_48184	328	3e-25	24 - 83	100	60 / 60	minus
Harvest35	U35_14520	1819	3e-25	1547 - 1606	100	60 / 60	plus

Contig Sequence (328 bp)

>U35_48184 328 Hv_44K_v2
TTTTTTTTTTTTTTTTTGATAAGATGAACCGAAACTTATTGATGATAATTAAGATAAAGC
GAATTGATCAAGTGAGGGGGATCCTCTCCGGCAGCTTCTCCTCGACAGTGTCGAAGTTGA
AGTTGTAGCTGTTGATGCCGGTGTAGAGTCCATCCCTCATGAGTGTCTCCTCCACCTTCC
CGTCTATGGTGACGTCCCGCTGCCAGTAGGTGAAGGGGACGTCGACGGTGCTCCTGGTCG
CGATGGCCATGACCTCGTGCCTCACCTTCTTCTCCATGGTCTGGCCCCAGTTGTACTCAC
CGTAGAACTCGGCCGAGATGCTGATCTG

Homology of Contig U35_48184 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None