- Probe CUST_19230_PI390587928
- Source Contig U35_48188
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_19230_PI390587928 | Hv_44K_v2 | TGAACACGTGTACCCTTGACATTGAGATGATGCTCACGTTAAAAGAGGCAAAACAAAAAA | 11 | GeneList: brown MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 2.402 | 2.731 | 1.462 | 0.426 | 0.377 | 0.336 |
| Raw | 43.610 | 75.523 | 37.057 | 15.414 | 3.974 | 3.569 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| Harvest35 | U35_48188 | 264 | 3e-25 | 12 - 71 | 100 | 60 / 60 | minus |
Contig Sequence (264 bp)
>U35_48188 264 Hv_44K_v2 TTTTTTTTTTTTTTTTTGTTTTGCCTCTTTTAACGTGAGCATCATCTCAATGTCAAGGGT ACACGTGTTCATGTGTTAACAATAGTATCAAACAAATAGGAGGCCACCGACTTAACAGGG AGACGTGCGCCTGTTGAAACGCACAAGGAGGGGAACAAAACAAGACACACATGCCCATAT TGGGTGCGCTAGCTATCAGGATCACGTTTACGATGACACACACAAGAAAAGAGGAACGAA ATCCCTTGTGAGCTCTGTGCAAAC
Homology of Contig U35_48188 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |