- Probe CUST_19223_PI390587928
- Source Contig U35_48197
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_19223_PI390587928 | Hv_44K_v2 | TCTCTTATCTCTGCACTGTACTATACGCATCGCCATGGCCATGAATGATAGTCAGCTCAA | 37 | GeneList: salmon MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 8.861 | 7.941 | 1.743 | 0.598 | 0.202 | 0.184 |
| Raw | 307.057 | 459.767 | 81.456 | 46.328 | 3.734 | 4.392 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_66065.1 | 2563 | 9e-22 | 2393 - 2454 | 97 | 60 / 62 | plus | None |
| JLOC1 | JLOC1_43521.1 | 2527 | 5e-22 | 2284 - 2345 | 97 | 60 / 62 | plus | |
| Harvest35 | U35_48197 | 209 | 3e-25 | 38 - 97 | 100 | 60 / 60 | minus | |
| Harvest35 | U35_10137 | 509 | 2e-22 | 434 - 495 | 97 | 60 / 62 | plus |
Contig Sequence (209 bp)
>U35_48197 209 Hv_44K_v2 TTTTTTTTTTTTTTTTTCCGAGTGAGAGGACGGCAGCTTGAGCTGACTATCATTCATGGC CATGGCGATGCGTATAGTACAGTGCAGAGATAAGAGAGAAAAGATGCTTAAGCTAGCGAA CGGGTGGCGGACGGACGGACATGACCGAGCTTTATGGACTGGAGGTTCTATATACACTGA GACGTGTGCCACGCACATGGCGCCGTGAG
Homology of Contig U35_48197 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |