barSeed - Barley Seed Development Database

Probe CUST_19218_PI390587928

Source Contig U35_7102

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_19218_PI390587928	Hv_44K_v2	CAATTCCCCTAATCATGTGATGACTGTTATGCAGTGGTTAATCTCAAAACTTGCTGTTGG	741	GeneList: white MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.055	1.584	1.591	1.335	0.454	0.375
Raw	1351.864	3210.344	2767.900	3642.937	437.557	392.273

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_13050.6	2255	2e-24	2196 - 2255	100	60 / 60	plus	ABC15741
Harvest21	ABC15741	824	3e-25	24 - 83	100	60 / 60	minus	ABC15741
Harvest35	U35_7102	824	3e-25	742 - 801	100	60 / 60	plus

Contig Sequence (824 bp)

>U35_7102 824 Hv_44K_v2
TGGCTATAGGTCTAATGGTGACATATGACAGCTTAGTTGAAAGTGTGAAGAGATCATGCA
TAGAAGATAGTATTGAGTTATTTGAAAGAAAGATCAATGCACTTGCTCATTTAGAGGAAC
ATGGATTTGATGTTAAGTTGCTGCAGCACAGTCTAATGAAATTACTCGAGGCCAAATGGG
AGCACACCAAGCATCTTGGACATCTGGACGAGTTGAAAGAATTAGTACCGCGGAAGGAGT
CTGCCATGTCCCAAAAGCATGCATTACTTGTTGAAAAAGAAGGAGCTATATTTCAGCTTG
AGCAGAAACTTGAGTACCTTCGCGGTGAAGCAGAGCAGATTGCAAGGGAGACAAAAGATG
AAGATGCAGAGCTCTTGAGGTTGAAAGTGGGAGTTAACATGGCTCAGGAAGCATGTGTTA
ATGTTGAAGTGCGGTTTCACGACATTCTAGCCGATATGAGTTCGAGACTGCAGCTTTCCG
AGTGATACAATATTCAGAAATCATTTCAATCTCCCAACTTTATTTGTTCCTGTAGCTTAT
GCTCCCATGTGTTGCACCTTTATGTTATCTAGGATCATCACCGAACTTGGATTAAGGTTC
CAATTGTCATTCGACACCTTTTGTGCATGTAGCAGATGTATGAATCTTCAATTCTGTCAA
GTTTAGACCCATGTTTCTATGCTAGTTGGATGGTATTTATCGTTGTGTAAACTGGTTGTC
TTGTGTTGTCAGTTTGTCACTCAATTCCCCTAATCATGTGATGACTGTTATGCAGTGGTT
AATCTCAAAACTTGCTGTTGGTTTATTAAAAAAAAAAAAAAAAA

Homology of Contig U35_7102 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi4g16410.1	372	9e-57
Arabidopsis v10	None