barSeed - Barley Seed Development Database

Probe CUST_19216_PI390587928

Source Contig U35_7104

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_19216_PI390587928	Hv_44K_v2	AATCCACGTGGTCCGTCTTTATATCCGGCAGATACATTGATGTTCCGAATGTGCAAAAAA	1204	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.361	2.203	1.029	0.871	0.280	0.545
Raw	98.616	143.150	60.155	80.303	8.916	18.875

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_74202.1	1034	2e-23	328 - 385	100	58 / 58	minus	ABC14763
JLOC1	JLOC1_49442.1	652	1e-23	41 - 98	100	58 / 58	minus
Harvest21	ABC14763	1275	3e-25	1205 - 1264	100	60 / 60	plus	ABC14763
Harvest35	U35_7104	1275	3e-25	1205 - 1264	100	60 / 60	plus

Contig Sequence (1275 bp)

>U35_7104 1275 Hv_44K_v2
GCAAGCACTTCATATGCGGCCGACTGGTGGACGTTAAGAGGGCGCGTGCTAGACCTCCGC
GGAACTTGGGCGAGCAACCTGCGCATCAGCATCAGCATCAGGTGGAACAGGGTCTGGTTC
AGGGTCACCAAGGTGCTGGGGCTGAGGCCAGTGGTGACAGTATGAGCTATGCTTCAAAGA
AGGTATTCGTTGGTGGTTTGCGTGACAACATCACAGAGGAGGAGTTCAGAGCTTACTTTG
AGGCGTTTGGCACGGTAACAGATGTTGTTGTGATATATGACAGCCTGACAAGCAGATCAA
GGGGTTTTGGTTTTGTCACCTTTGATTCTGAGGAAGCTGTGAGAAAGGTGATGGGGCAAA
GCTTTCATGACTTGAAAGGGACAAGGGTGGAAGCAAAGATTGCTATCCCCAAGGATGCTC
AGTATTACCATAATGGCCGAGGTCGTGGCTCAAGAACCTTTGGCGGAAGGGGTCCTGTTG
GCTTTGATGGTTCAACATACCAACCATACAATAATCGACATGGCTTCTACAATGGCTATA
TGCCACAACCTGTTCCAACACATCCCTACTATCCTGGCCTCTATTTTGGTATGGGAGGCA
ATCCCTATGCAAATGCATATCCAAACCATGGAGTCATGGCAAATGTTCCAAACATGATGA
CAAGGCGTCCAGTATATAGCCCATATCCCCCAATGTATCCTGGCTATGGTTTTGCATACA
GAAGTGGTTATGCGGGTGCTGTGCCTTCTGTTCAGTATGGCATTAATGGTGGCAGGGATT
ACATGAACGACCAAGACTCTATGGATGCACAAGAAGTTGACAGCGCTGCTACCATTGCTA
CGAAGTTTGAATACATGAAGCTAGGTTCACAATGACGTTCTGGATAATTATTTCTACACT
GATGACAGCGGAAGTTGCAACTGTGAAGACATGAGCTGAGATTCTTTGGTTGACAAGTAG
TATACCATTGGAAATTATCAACTTACCCCCATTCCTTGTTTCAAGTGCATGTAGACTGAA
AACATTCAAGTTTCAACTGGCTGTTGAGCTCACATCCCTTGTACCAATGCTTAAATGCTT
TTAATGTATCAGAATCAGAACAGTTGATCTTGGTTCTGTATTGGTGCTGGCATGTATGTA
ACCGGTGCCACGATCATCCCTTGTTGTGCAGTGCCTTTATTGTTGGTTGTTGGGCAGCAA
ACTGAATCCACGTGGTCCGTCTTTATATCCGGCAGATACATTGATGTTCCGAATGTGCAA
AAAAAAAAAAAAAAA

Homology of Contig U35_7104 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g03240.1	378	1e-122	protein\|RNA recognition motif containing protein, putative, expressed
Brachypodium v1_2	Bradi1g57570.1	377	2e-132
Arabidopsis v10	None