barSeed - Barley Seed Development Database

Probe CUST_19213_PI390587928

Source Contig U35_7107

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_19213_PI390587928	Hv_44K_v2	AATGCAGCCCATATAGTTGGATATCATACTCTGAAGGTATGACATGCTTCTTCCTTCAAA	984	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_59489.1	1955	7e-23	1897 - 1953	100	57 / 57	plus	ABC17408
JLOC1	JLOC1_38717.2	1274	4e-23	1087 - 1143	100	57 / 57	plus
JLOC1	JLOC1_38717.1	2014	4e-23	1827 - 1883	100	57 / 57	plus
Harvest21	ABC17408	1058	3e-25	985 - 1044	100	60 / 60	plus	ABC17408
Harvest35	U35_7107	1058	3e-25	985 - 1044	100	60 / 60	plus

Contig Sequence (1058 bp)

>U35_7107 1058 Hv_44K_v2
GCGGATATTGCGCCGTTGATGGTGAAAGAGGGGCCCAAAGACTATTGGTCTACGAGTATA
TGCCCAATAAGAGCTTGGAAGATCACCTGTTCAGCCGAATTAATCCTCCTCTCTCGTGGA
ATAGAAGGCTTCAGATTATCTTGGGTGCCGCTGAAGGATTGGCTTACCTGCATGAAGGGC
TTGAACTTCAGGTGATCTACCGGGACTTCAAAGCGTCGAACGTGCTGCTGGACAAGGACT
TCCAAGCAAAGCTATCAGACTTCGGGCTCGCGAGGGAGGGGCCAACAGAAGGGAACACTC
ACGTCTCAACTGCGGCTGTGGGAACGCACGGGTACGCGGCGCCGGAATACATCGAGAGGG
GGCACCTGACGGCGAAGAGCGACGTGTGGAGCTTCGGGGTGGTGCTGTACGAGATCCTGA
CGGGGCGGCGGTCCCTGGACAGGAACCGGCCGCAGGGGGAGCAGAAGCTCATTGAGTGGG
TGCCCCAGTTCCCGCCGGACAGCCGCAACTTCCGCATGATCATGGACCCCAAGCTCCGTG
GTGAGTACTCCTCCAAGGCGGCCCGGGAGATCGCCAAGCTCGCCCAGAGCTGCCTCCTCA
AGAACCCCAAGGAACGGCCCGCCATGAGCGAGATCGTCGAGGTTCTCAGGCGAGCCGTGC
AGACCGAGGTGGCCTCTGTGGACAAGGCACCCAGCGCCGGCAACGGGAAACGAGTGAACG
TGGCACCGCCGTCGAGGAGGTGACTGATATATGTTGCCATGGAGAACTCCTTCTCCCTCC
TTAACTCCTTTTAGGGGAGGTTGGCGTATAGAAGTTATGCGAACATGAGTTTAGATGATG
ATTTGAGTTGTCGGATTGTTGATAGTGTTTTCCCTCTTCTTTGGAGGCTCATTTGAGTGA
AGAATCAGTTACTGTGGCATGCAAATTAACCAGCCCATACTTGAATAGGAGTAGCAAACT
TTACCTGTTGCTGTTGGAGGACTCAATGCAGCCCATATAGTTGGATATCATACTCTGAAG
GTATGACATGCTTCTTCCTTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_7107 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g36320.1	407	2e-138	protein\|tyrosine protein kinase domain containing protein, putative, expressed
Brachypodium v1_2	Bradi4g36137.1	407	1e-155
Arabidopsis v10	AT5G47070.1	410	1e-94	Protein kinase superfamily protein \| chr5:19118683-19120528 REVERSE LENGTH=410