barSeed - Barley Seed Development Database

Probe CUST_19207_PI390587928

Source Contig U35_7113

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_19207_PI390587928	Hv_44K_v2	TTAGAACACGAAGACTCTTTACGAACCCAACTCCGTATTAACAAATCATCGCGGCCAGGA	700	GeneList: salmon MasterList: Inositol_phosphorylase_phosphatase_and_kinase_Function_Probe_Module

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	3.152	2.611	0.603	0.530	1.090	0.971
Raw	20.029	27.669	4.980	5.297	2.838	3.393

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK355112	1237	2e-24	1171 - 1230	100	60 / 60	plus	ABC10529 ABC16614
MLOC	MLOC_65283.4	669	2e-24	595 - 654	100	60 / 60	plus	ABC10529 ABC16614
MLOC	MLOC_65283.3	2840	2e-24	2766 - 2825	100	60 / 60	plus	ABC10529 ABC16614
JLOC1	JLOC1_42950.1	1332	8e-25	1229 - 1288	100	60 / 60	plus
Harvest21	ABC16614	760	3e-25	701 - 760	100	60 / 60	plus	ABC16614
Harvest35	U35_7113	760	3e-25	701 - 760	100	60 / 60	plus

Contig Sequence (760 bp)

>U35_7113 760 Hv_44K_v2
AGGCCGTGCCGGGCGGCGTGGGCGGCGTGATGCCGGCCGATCTGGTGCGGACGGAGCTGT
CGCAGGACAAGGCCCGCATGGGCGGCGTCGACCGCGCCGGCCGCCCCGTCCTGCTCGTCT
TCCCCGCCAAGCACTTCTCCGCCGACCGCGACATGGCCGAGCACAAGCGCCTTGTTGTGT
ACCTGCTGGACAGGATCAGTGCGAGGATCCCGCGGGGGCAGGACAAGTTCATGTGCATCG
TGGACCTCAAGGGGTGGGGGTACGCAAACTCGGACGTGCGCGCGTACATCGCGGCCATCG
AGATCATGCAGGGCTACTACCCGGAGCGGCTGGGCAAGGCGCTCATGGTACACGTGCCCT
ACATCTTCATGAAGGCCTGGAAGATGGTGTACCCTTTCATCGACACCAACACCAGGGACA
AGTTCGTGTTCGTGGATGACAAGAACCTGGAGGAGACGCTGCGGCGGGAGATGGACGAGA
GCCAGGTGCCGGAGATGTACGGCGGGAAGCTGCCCATTGCCCCCCTCACCGACGACTAGC
TAGCTACGGCGATCGATGGATCGATCGACGTGCTTAGTACCGAGACAAACATCGGTCTCT
TGTAGATGTAAATGTGATTGGGGGGAGAGATGCGCTGCTAGCTCTCGCACCGTCACTCCT
TGCTTTATACTGTAGGATAATTTCTGATCAAAACCATTTTTTAGAACACGAAGACTCTTT
ACGAACCCAACTCCGTATTAACAAATCATCGCGGCCAGGA

Homology of Contig U35_7113 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g70210.1	248	6e-82	protein\|CRAL/TRIO domain containing protein, expressed
Brachypodium v1_2	Bradi2g59420.1	248	6e-102
Arabidopsis v10	AT1G01630.1	255	4e-58	Sec14p-like phosphatidylinositol transfer family protein \| chr1:229206-230675 FORWARD LENGTH=255