barSeed - Barley Seed Development Database

Probe CUST_19206_PI390587928

Source Contig U35_7114

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_19206_PI390587928	Hv_44K_v2	AACGTCCTATATTTAGTTACAGAGGTAGTATTAAGGGCTAAGCAGTAAGTTGTAACTGTA	576	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_69628.1	4855	2e-24	4171 - 4230	100	60 / 60	plus	ABC16556
JLOC1	JLOC1_46153.1	4900	8e-25	4240 - 4299	100	60 / 60	plus
JLOC1	JLOC1_46154.2	5170	8e-25	581 - 640	100	60 / 60	minus
Harvest21	ABC16556	708	3e-25	109 - 168	100	60 / 60	minus	ABC16556
Harvest35	U35_7114	744	3e-25	577 - 636	100	60 / 60	plus

Contig Sequence (744 bp)

>U35_7114 744 Hv_44K_v2
AGCACCCAGGTGACTTGCTAACCTCTCTGCCGGCGATATCCTCATCACAAGAAGACGATT
TACTCCTCAAGGACATACTGGACCAGCGGTTGGATCCTCCAACGGAACAGCTTGCAGAAG
AGGTTGTGTTCATCGTCAGGATAGCGCTTGCCTGCACCAGGGTAAATCCTGAATCAAGGC
CTGCAATGCGATCTGTAGCACAAGAGATATCAGCACATACCCAGGCCTACCTCTCTGAAG
CATTCAGACTCATCACAATAAGCAAACTAACAGACTACCAGAAGTGATGCACCTTTGAGC
AGAGATTCTGAATCTACACAGGCAGGTGAAAATTGCAGACTTATTAATTCTGTAAAATAC
AGTTTCAAATCCTCAAGTACTTTGTGTGTCAGTTTGCCTGCCAAAGACCAGCATTAGGAG
AGCATATTGCGATAACTCTGATAAAATAGATAGCTAAGCTATCCTGAAGATTGTCTGACT
GTGAAACAATGTCGGCGGTGATGTTTGTATTTCTCATTATTCTACTCCCTAAATAACTAA
ATACAAGACGTTTTTGCAGCTCAATTTGAACTGTAAAACGTCCTATATTTAGTTACAGAG
GTAGTATTAAGGGCTAAGCAGTAAGTTGTAACTGTAAGATAGACAATAAAAAAGCAATAA
GTGTTATGTCTCTGGAAATGGATAAGAATATCTTGTCCAAATAGACAATGGATGTATTTG
TGTGATNAAAAAAAAAAAAAAAAA

Homology of Contig U35_7114 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None