barSeed - Barley Seed Development Database

Probe CUST_19192_PI390587928

Source Contig U35_7128

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_19192_PI390587928	Hv_44K_v2	TGAAGAACAATATCTCTAGCCAATTATCAGCATCCGTAGGCCTATGTTACATGTAAAAAA	1125	GeneList: red MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.301	1.713	1.135	0.887	0.326	0.403
Raw	602.836	1268.557	713.926	929.800	114.743	152.936

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK371930	1114	2e-24	1013 - 1072	100	60 / 60	plus	None
MLOC	MLOC_14006.2	3006	2e-24	510 - 569	100	60 / 60	plus	ABC12884
MLOC	MLOC_14006.1	4419	2e-24	764 - 823	100	60 / 60	plus	ABC12884
JLOC1	JLOC1_9535.1	3108	8e-25	2518 - 2577	100	60 / 60	minus
JLOC1	JLOC1_9534.1	1556	8e-25	777 - 836	100	60 / 60	plus
Harvest35	U35_7128	1247	3e-25	1126 - 1185	100	60 / 60	plus

Contig Sequence (1247 bp)

>U35_7128 1247 Hv_44K_v2
TCGAGCACTGTTGGCCTACTAAAAGGCCACGGAAAGACTTTGACCCTCCCCTTTGACCCG
CGTCTCGCCCTCCGCGTAGGCACACACGAGAGAGGAAAAGGCGCGGCCGCCCATGGCGAC
GACGGAGGCGGGCAGCGCCGGCGCGGGCGCCGCCTACGAGGAGGAGCGCCGGAAGCGGAT
CCTCGACAACCTCAAGCACCTCGAGGATTTGGGAATATCCAAGATGGCCAAGAGTTTGAT
CCAGGCCACGAGACAGCCGGACAAGAGCGCTCGCGCCAGCCCAAAGCCCAGGAAGAAGTT
CGATGCTAGCACTGAAGTCAGGCGCTCCTCCAGGGCCAGGACCACTGTCTCCTACAAGGA
TGATTTTCCCGAACTCGATGATTTTGTGCGCCGCAGAAGGATAAGTAAAAGTTCAGACAA
TGGTAGGGGATACACTGGGAGAATTTCTTCTTACCAACAACAACAGCGTGCTTTTAAAAG
AGCTGAGAAACTTCAAGATAGTCTAGACCCTGACAACCCGTCGTTTGTCAAGAACATGGT
TAGGTCACATGTATCCAGCTGCTTTTGGCTTGGTCTCCCGTCTAGTTTCTGCAAAGATCA
TCTGCCTCCCAGAGAACATAAGATGGTGTTAGAGGATGAAGAGGGTGTTGAATTTGACGC
TGTATACATCGGAAATCGAACAGGTCTGAGTGGTGGATGGAGAGGCTTCTCAATGCACCA
TGACTTGGAAGATGGGGATTCATTGGTCTTTGAATTAGCCGAGCCTGACAGATTTAAGAT
TTACATTTTTAAAGCTATCGAGGATGCAAAAGAGGCCGAGCCCAATGGTAAGAATGCTGA
TATGGATACAGCTGACACTAATTCAGCGGAGGAAGTTCTTGACCAGATGGATTCACCTGT
TTCTGAACCCCCTTCCAGCCCCGAGCCTCTAAAAGGAGCTAAAAAAAGAAAGCTCCATGG
GCGACGGTAGTTTTCTTATTAGTACCACCAGACCATGAAATATATGTACTTTGGGCAAGT
ATGTTGCTGTATTAGCTATGCGCTCTCCTGCCAGGTCATCTGTTTTGCATCTTTTTGTTG
GCCTGTTTCTGAAAATATGGGTGCTCAGTAATCACCCTTCTGCTATGAAGAACAATATCT
CTAGCCAATTATCAGCATCCGTAGGCCTATGTTACATGTAAAAAAATGTTCCAGTAATCT
AGCATTCATAACCCCTATATATTATGCTACAAAAAAAAAAAAAAAAA

Homology of Contig U35_7128 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g40280.1	280	3e-109	protein\|B3 DNA binding domain containing protein, expressed
Brachypodium v1_2	Bradi2g22130.1	275	1e-125
Arabidopsis v10	None