barSeed - Barley Seed Development Database

Probe CUST_19181_PI390587928

Source Contig U35_7139

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_19181_PI390587928	Hv_44K_v2	TGTAAAATCTGAATCTCCAGATTGTGCCAAGAAACAGATTTATTCATCTTTCTCGGAGCA	1121	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.210	2.232	1.325	0.725	0.301	0.320
Raw	1140.886	1766.113	923.530	780.282	114.674	133.052

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_62044.1	1969	7e-23	1888 - 1947	98	59 / 60	plus	ABC16054
MLOC	MLOC_62044.3	844	7e-23	776 - 835	98	59 / 60	plus	ABC16054
JLOC1	JLOC1_40585.1	1545	4e-23	1448 - 1507	98	59 / 60	plus
Harvest21	ABC16054	883	3e-25	19 - 78	100	60 / 60	minus	ABC16054
Harvest35	U35_7139	1199	3e-25	1122 - 1181	100	60 / 60	plus

Contig Sequence (1199 bp)

>U35_7139 1199 Hv_44K_v2
GCCCCCCCCTTGCACAGCCACTCGGGCGTTTGACTTTATCGAAAAGGAGGGTCTCCAACC
AGATACGAGACTGTTTACATCAATGATCAGTGCCTGTATTAACGCTGGAGTTCCGAAACA
AGCAGAGAAATTGCTCAAAAAAATGGACGAGCTTTCCATGAAACCCAGCAGGGAACTATA
CATGGATGTGATGCGGGCATATGCTGAGCGTAACCTAGTAGATGGAGCTCAAATGATGAG
AACACAAATGTCAATGGCTGGAATCGAACCCACGTTGGAGTGCTTCACATTGCTTATAGA
AGCATATGGACGGGCTGGCAACCCTGATCCTGCATATGAAGCGTTTGAACAGATGAGGAA
GAATGGGCATGAACCAGATGACCGTTGCCTGGCTGGTATGATGACTGGACTCATGAAGAC
GAACCAGCTGGATCAGGCTTTGAAGTTGCTGCTGAGTTTAAAGGAGGGGGTTAAACCCGG
AGTGAAGACAAATCTGGTCCTGCTGGATTGGCTGTCCATGTTGCAGTTGGTGCAAGAGGC
TGAACAACTTGTACAGAAGATAAGAAAGGCGGGAGAAGAGCCCCTAGAGATCCATGTTTA
CCTTGCTGATATGTATGCGAAATCACGCCAGGAAGAGAAAGCCCGCAAATCCCTCAAGAT
CTTGGAAGAGAAGAAGAGACTACTGAAGGCTGATCACTTTGAGAGGATTATAAGAGGCCT
TCAGCAAGGGGGTTTCTGGGAAGATGCAAAAAAATATTTCAAAATGATGAAATCTCGTGG
CTTTGTTCCATCAGCAACAGTTGAGGCCGGGGTCAGGGGCGTCGTTCCCCCGGCTGGCAG
GTATCAGGGTTAAAGCTTGCAGGCTGGCAGGTATCAGCTGGCTATGGCACTGATTCTGGT
ATGAAATCTAGCAGTAGCACCGATGACAGCACGGCTTATTCAGAGGAACTGATGTGATAA
AGATCCCCATTATCGGGTGAATTTTGGTTGTTATTTGAGGTCTGTAGACCATGAGCTCAG
ATGAAGTTGATGAGTGCGTGAACCCCTGGTGTTAGTGCCATGAATTTTTCTGCTCTCATA
AATCGGGTCTTGCACATGTATTTCATAACATGTTTTGTCATTGTAAAATCTGAATCTCCA
GATTGTGCCAAGAAACAGATTTATTCATCTTTCTCGGAGCANAAAAAAAAAAAAAAAAA

Homology of Contig U35_7139 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g39820.1	684	4e-92	protein\|PPR repeat domain containing protein, putative, expressed
Brachypodium v1_2	Bradi3g48510.1	682	2e-116
Arabidopsis v10	None