barSeed - Barley Seed Development Database

Probe CUST_19180_PI390587928

Source Contig U35_7140

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_19180_PI390587928	Hv_44K_v2	CTTGCACATTGTGCCACCACAACAGAAAGGAAAATAATGCTTGATACTTTGGTGAATAAA	789	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	3.140	2.127	1.222	0.702	0.253	0.242
Raw	180.975	191.500	96.294	85.011	11.050	11.692

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_6588.1	2187	1e-23	2101 - 2158	100	58 / 58	plus
Harvest21	ABC14997	863	3e-25	790 - 849	100	60 / 60	plus	ABC14997
Harvest35	U35_7140	863	3e-25	790 - 849	100	60 / 60	plus

Contig Sequence (863 bp)

>U35_7140 863 Hv_44K_v2
ATTACAACTTGTGATGTCCTTAAAGATGGGTCTCTTTACTACCCTGTTCCTCCTACTAGG
AGGTTCGGTCTTCTACCATCTTGCGGAAGCAAGCATCCTTATGGTTGTTAAACACAAGAA
ATCATCTGTCAATGTCATTACATCGTCCAGCGGGCTCTCTCTTAGTGTCCTCACACAGCA
ATCACTCCTTGCTTGCGTCTGCGTCTTCCTTCATGCCTACGCCGAAGGGCTTGCACTTGG
TGTGGCGGCACGCAAGGCATATGGTCTAGGCCGCTACATGGTTCTTCCAGTCTCCCTTCA
CGGTCTACCACGGGGTGCTGCTGTTGCTAGTTGTGTATATGGTGCCACTGATAGCTGGCG
AGGAGCCTTGGCAGCTGCAGCTCTGACTGGGCTTGCAGGACCAAGCGCGGCCATCAGTGC
AATCCTTGCGAAGATTGGCTATGATGGACTGGACTACTGGATGGTGATTGCATGCGGGGC
TTTGATCCCGAGCTTTGGCCGTGTCTTCAGACGCTCGCTGCGGCTGGACGTGAGGAAGAG
TATCTGCGGGCTCCTGATAGGTTTTGGTTTTGCTTGGGTGTGCTTGATGTCCACCAGATT
CATCTGCTTGCACACGCCTTACTGCAATTCAGCTCCAGAAGCGGTCACATGATGTGTTCC
TGTCAGATAGTCACATGTAACATCAATGTAACGATAACACTGAAACCGTAAGAGAGGGTC
TCCTTTCCTTGTATGAACAAAATGATGAAAGGGAAACAAACATTATACAATGATTTTGCC
TGGAATAATCTTGCACATTGTGCCACCACAACAGAAAGGAAAATAATGCTTGATACTTTG
GTGAATAAAAAAAAAAAAAAAAA

Homology of Contig U35_7140 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g25194.2	578	4e-90	protein\|metal cation transporter, putative, expressed
Brachypodium v1_2	Bradi1g76820.1	572	4e-95
Arabidopsis v10	AT3G08650.2	619	1e-55	ZIP metal ion transporter family \| chr3:2624694-2627308 REVERSE LENGTH=619