barSeed - Barley Seed Development Database

Probe CUST_19179_PI390587928

Source Contig U35_7141

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_19179_PI390587928	Hv_44K_v2	CAATTTTTTCTTATCGAACGATCGATGCCGTGGTGGACCCCTCACGTTTTTACCAAAAAA	830	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.684	2.602	1.205	0.715	0.310	0.451
Raw	4119.063	6001.243	2546.903	2426.417	362.645	572.421

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC14767	900	3e-25	11 - 70	100	60 / 60	minus	ABC14767
Harvest35	U35_7141	900	3e-25	831 - 890	100	60 / 60	plus

Contig Sequence (900 bp)

>U35_7141 900 Hv_44K_v2
TCCATTACTGACAACAAAGAGGGTGTTTTGGCGTGGTGTTCTTGAAGAACTGTTGTGGTT
CATCAGTGGCTCAACGAATGCAAAGGTTTTACAGGAAAAAAACATTCGTATATGGGATGG
CAATGCGTCAAGGGAGTATCTTGACAGTATTGGTCTATCACAAAGAGAGGAGGGTGACTT
GGGACCAGTTTATGGATTTCAGTGGAGACATTTCGGTGCTGAATATTCTGACATGCATGC
TGACTACACGGGGAAAGGTTTTGATCAGTTAGCTGATGTCATTAACAAGATCAAGAATAA
CCCTGACGATAGGCGTATCATTCTGTCTGCATGGAATCCAACAGATCTCAAGAAGATGGC
ACTTCCACCTTGCCACATGTTTGCACAGTTTTATGTCGAGAATGGAGAATTATCCTGTCA
GATGTATCAGCGTTCAGCTGACATGGGGCTTGGTGTACCATTCAACATTGCATCATATTC
TCTTCTGACATGTATGATTGCACAAGTTTGTGATCTTTCTCCTGGAGAGTTTGTCCATGT
GATAGGTGACGCCCACGTCTACAGCACGCACGTGCAAGCCTTGGAGGAGCAGCTTCAGAA
GCAGCCCAAGCCATTTCCTATCCTGAAGATAAACCCTCTGAAGAAGGATATAGACTCGTT
CGTCGCATCGGATTTCAAGCTGGCCTGCTACGATCCTCACCAGAAGATAGAGATGAAGAT
GGCAGTATGATGACAAGGGAGTTAACTTGGCATCGACCATTGATACCAGCATACGATGTC
TACTCTTGACGGTGTCTTTGTTAACCAAGATTTGTGACAGAATCTCTAGGCAATTTTTTC
TTATCGAACGATCGATGCCGTGGTGGACCCCTCACGTTTTTACCAAAAAAAAAAAAAAAA

Homology of Contig U35_7141 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os11g29390.1	522	9e-160	protein\|bifunctional dihydrofolate reductase-thymidylate synthase, putative, expressed
Brachypodium v1_2	Bradi4g07810.1	518	1e-169
Arabidopsis v10	AT4G34570.1	565	8e-153	\| Symbols: THY-2 \| thymidylate synthase 2 \| chr4:16511129-16514110 REVERSE LENGTH=565