barSeed - Barley Seed Development Database

Probe CUST_19176_PI390587928

Source Contig U35_7144

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_19176_PI390587928	Hv_44K_v2	TCAGGGCTTCAGGCAGATCAAATTGATTATTTGAATGCGCATGCAACATCGACTCCTCTC	548	GeneList: green MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.169	1.253	1.451	1.030	0.368	0.446
Raw	123.163	211.722	207.260	237.931	29.234	38.546

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_80731.4	343	2e-24	20 - 79	100	60 / 60	minus	ABC14155
MLOC	MLOC_80731.1	884	2e-24	824 - 883	100	60 / 60	minus	ABC14155 ABC14156
MLOC	MLOC_80731.2	1061	2e-24	744 - 803	100	60 / 60	minus	ABC14155 ABC14156
MLOC	MLOC_80731.3	905	6e-24	513 - 571	100	59 / 59	minus	ABC14155 ABC14156
MLOC	AK376587	1581	7e-23	1062 - 1121	98	59 / 60	plus	ABC14155 ABC14156
JLOC1	JLOC1_53752.3	1250	8e-25	353 - 412	100	60 / 60	plus
JLOC1	JLOC1_53752.2	1204	3e-24	308 - 366	100	59 / 59	plus
Harvest21	ABC14155	1198	3e-25	549 - 608	100	60 / 60	plus	ABC14155
Harvest35	U35_7144	1198	3e-25	549 - 608	100	60 / 60	plus

Contig Sequence (1198 bp)

>U35_7144 1198 Hv_44K_v2
GCGGAAGCATCTCAGACATTTTAGATGCATCACAGCTGATTGCTGAAAATCGTCTACGTC
GTCTCAGCCCATTCTTCATCCCCAAGATTTTGATCAACATGGCATCAGGTCATGTCAGCA
TGAAATATGGTTTCCAGGGTCCAAACCATGCTGCCGTGACAGCTTGTGCCACAGGCGCTC
ACTCTATTGGTGACGCTACACGGATGATTCAATTTGGAGATGCAGATGTGATGGTGGCTG
GAGGAACAGAGTCTAGTATTGATGCTTTATCTATAGCTGGATTTTCTAGGTTAAGGGCAT
TGTCTACAAAGTACAACTCTCTTCCACAAGCATCTTCGAGGCCATTTGATTGTGGCAGAG
ATGGATTTGTGATTGGTGAAGGTTGTGGAGTCATGGTGTTGGAGGCACTTGACCATGCAA
TGGAACGAGGCGCGAAAATTTATGCTGAAGTTCGAGGCTATGGCATGTCTGGTGATGCAC
ACCACATAACTCAGCCACAAAATGATGGTAGAGGTGCTATCTTAGCCATGGAGAGGGCAT
TGGAACAGTCAGGGCTTCAGGCAGATCAAATTGATTATTTGAATGCGCATGCAACATCGA
CTCCTCTCGGGGATGCTGTGGAGGCAACTGCAATAAAATCTGTCTTTGGCGACCACGCGG
CATCTGGTGGTCTCGCGTTCTCCTCCACGAAGGGAGCGATCGGTCATCTGTTAGGCGCAG
CTGGATCGGTGGAAGCAATCTTCACCGTGCTAGCGATTCACCATGGAGTGGCGCCGCCCA
CGCTCAACCTGGAGCAGCCCGACCCGCTGTTTGAGGGCGCGTTCATGCCTCTAACCGCCG
CGAAGAAGATGCCGATACGGGCGGCCATCTCGAATTCTTTCGGGTTTGGTGGAACCAACG
CGTCGCTGCTGTTCTCGTGCCCGCCCTAGCGATCCAACATCACGCTCCCTCCCCTTTTTT
TAACCCCTTCGATTCGAAGAGGCATGCCAGAATGTTGAGAGTTTTTCCGTCCGTGAACTT
AAACGGGGGAAGGCACCATCCGCGTTGAGCAGGATTCGGGGGTTTCAGGCACCGACCATT
GTGCTGTGCTCCCTTCAGTCCGGAGCACCGTCCAACTTGTGGGCTTTGACTCGTAGGCCT
GTAAATTTTTACAGTACGAGAATTATCGCTGATTTGTTTTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_7144 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g10320.1	298	0.0	protein\|3-oxoacyl-synthase, putative, expressed
Brachypodium v1_2	Bradi3g07140.1	461	0.0
Arabidopsis v10	AT2G04540.1	461	6e-174	Beta-ketoacyl synthase \| chr2:1581521-1584635 REVERSE LENGTH=461