barSeed - Barley Seed Development Database

Probe CUST_19174_PI390587928

Source Contig U35_10044

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_19174_PI390587928	Hv_44K_v2	CATCAGCAGCATGTGGTTTCAGTATATTCTAACTCTCTGTTAAAGGAAAGGAAATACAGT	772	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_59401.12	1194	7e-23	1006 - 1062	100	57 / 57	plus	None
MLOC	MLOC_59401.8	3940	7e-23	3140 - 3196	100	57 / 57	plus	None
MLOC	MLOC_59401.1	3415	7e-23	3193 - 3249	100	57 / 57	plus	None
MLOC	MLOC_59401.4	4122	7e-23	3322 - 3378	100	57 / 57	plus	None
MLOC	MLOC_59401.2	3616	7e-23	3394 - 3450	100	57 / 57	plus	None
MLOC	MLOC_59401.3	3412	7e-23	3190 - 3246	100	57 / 57	plus	None
JLOC1	JLOC1_38657.11	3178	4e-23	3097 - 3153	100	57 / 57	plus
JLOC1	JLOC1_38657.10	3099	4e-23	3018 - 3074	100	57 / 57	plus
JLOC1	JLOC1_38657.9	3207	4e-23	3126 - 3182	100	57 / 57	plus
JLOC1	JLOC1_38657.8	3146	4e-23	3065 - 3121	100	57 / 57	plus
JLOC1	JLOC1_38657.7	3147	4e-23	3066 - 3122	100	57 / 57	plus
JLOC1	JLOC1_38657.6	3294	4e-23	3213 - 3269	100	57 / 57	plus
JLOC1	JLOC1_38657.5	3205	4e-23	3124 - 3180	100	57 / 57	plus
JLOC1	JLOC1_38657.4	3115	4e-23	3034 - 3090	100	57 / 57	plus
JLOC1	JLOC1_38657.3	3112	4e-23	3031 - 3087	100	57 / 57	plus
JLOC1	JLOC1_38657.2	3325	4e-23	3244 - 3300	100	57 / 57	plus
JLOC1	JLOC1_38657.1	3322	4e-23	3241 - 3297	100	57 / 57	plus
Harvest35	U35_10044	862	3e-25	773 - 832	100	60 / 60	plus

Contig Sequence (862 bp)

>U35_10044 862 Hv_44K_v2
AAGTGAGTATGGTTTTCACAGGTTGGCATTTGGCCGATTGCCCTCTCGATCCCGCACTGT
GTGACAAGTTCCTGGACCGCAAGGAGGAGGCCGCTAAATCGAGGGAGCGTAGGTCGAACC
AAAAGCTTCTCTTTGATTGTGTAAACATGGCATTGGTTGAGACTGGCCAGGAAGCCTTGC
TAAGAACCTACCCATGGGGTAAAGCATGCTTTGGAGCACGGAGCGAGGCATTGTCTCAAG
ATCTACGGGAAGAAGTATGGAGCCACGTGAGGGATTGGCTCTACGGGGCGGAGAGGTTCG
CGGCAAACGAGTACGGCGATGCTGCAATGATGCTGGAAAGAATCGTGCACCAAGAGGTGG
AAGTAGGGGGCTGGATGAAATCAGCGAGGTCAGAAGCGGATGAGATCACGAAACAGATCG
CAGATGGTCTGTTGGAGCAGCTAATCGGAGAAGCCGCGGCGGATCTTGCATTTCGTTTGC
CACAGCAAGGTGTTCCAATGCCAGTGCCAGATCTCTAGGAAGCAACTGCCCTGTGTGTTC
ATGCTCCTATCATATCAGAGCTGGTCTTGAATCTGTTGTGCTGAGAGAATCCTTGAGCAT
CTTCTTCATACTACTACTAGCTTGTAAGCCAAGTCCACGTAGTAGTTGCTTCTGCATATA
CTTGTAGTGGCACACTGCAGATTGTGCTACATCCCTTTTTGGTCAAACCATGTCAACTGT
GCAGCAACTAGTTTTTCCTTGTTACTTTCACAGTAGTAGCATATTGTACTGTCATCAGCA
GCATGTGGTTTCAGTATATTCTAACTCTCTGTTAAAGGAAAGGAAATACAGTATTTTGCA
AGACCAAAAAAAAAAAAAAAAA

Homology of Contig U35_10044 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi5g15104.1	916	5e-67
Arabidopsis v10	None