barSeed - Barley Seed Development Database

Probe CUST_19171_PI390587928

Source Contig U35_10046

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_19171_PI390587928	Hv_44K_v2	AGAGATTATGTAAGGTGATACATGGCTCATGGATTGCCATGTGCTGCTGGTGCACATATG	907	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	3.071	4.572	1.289	0.808	0.605	0.774
Raw	34.719	80.041	20.140	20.286	3.036	7.235

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_70488.1	323	2e-24	20 - 79	100	60 / 60	plus	None
JLOC1	JLOC1_46778.1	1696	8e-25	1540 - 1599	100	60 / 60	plus
Harvest35	U35_10046	1054	3e-25	908 - 967	100	60 / 60	plus

Contig Sequence (1054 bp)

>U35_10046 1054 Hv_44K_v2
GGTTCAACGCGACGGTGGAGTTCTACTGGTCGCCGTTCCTGGTGGAGTCCAACTCGGACA
ACCCCAAGATCCACAGCATCCAGACCCGGATCATCGACGCGGAGGCCATCGCGTCGCACG
CCGCCAACTGGCGCAACGCCGACTACCTCGTCTTCAACACCTACATTTGGTGGATGAACA
CCCTCAACATGAAGCTCAAGAGGCCGGGCGGGCAGGACTGGGAGGAGCATGAGGAGGTGG
TGAGGATCGAGGCGTACCGGAAGGTTCTCAACACCTGGGCTGGCTGGGTGAACGACAACA
TCGACCCGGCGCGCACGTCCGTCTTCTTCATGAGCATGTCCCCGCTGCACCTCAGCCCGC
AGGTGTGGGGCAACCCGAACGGGATCCGGTGCGCGAAGGAGACGATGCCGCTGGTCAACT
GGCGCGGGCCGATATGGCTGGGGACGGACTGGGACATGTTCAAGGTGGCGTCCAACATCA
CCCGGGCGGCGGCGCCGCGGGTGCCCATCACCTTCGTGGACATCACCACCATGTCGGAGC
GGCGCAAGGACGGGCACACCTCCGTGCACACCATCCGGCAGGGGCAGATCCTCACGCCGG
AGCAGCAGGCCGACCCTGGCACCTACGCCGACTGCATCCACTGGTGCCTCCCCGGCGTGC
CCGACATTTGGAACACCATACTCTACACCAGGATCATGTCCAGGCCGGACCCCGGGATGC
CTGCTATCACGGCCACATAGGTTACAGCACAGAAGTTCATTCAGAATTCGGTTTAAAGCT
TCTTCTTCTTCTTCTTCTTCTTCTTCTTTTTCTTTACATTCTTTCTGGCCTTTTTAGTTT
TTACATGTCAAAATACGCCAGCGTTTTTTTTTCTTTCTTTTTTTCATTGGGGGTAGGTTA
AGTGGAAAGAGATTATGTAAGGTGATACATGGCTCATGGATTGCCATGTGCTGCTGGTGC
ACATATGCGCTGTAAGGAGGTTCCTGCTCAAACTGTAAATTTTAAAGTCAAAGAGACGGA
CGGATGGTTTTTTGGGGAAAAAAAAAAAAAAAAA

Homology of Contig U35_10046 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g61460.1	523	2e-155	protein\|leaf senescence related protein, putative, expressed
Brachypodium v1_2	Bradi2g54010.1	540	1e-164
Arabidopsis v10	AT3G55990.1	487	3e-101	\| Symbols: ESK1, TBL29 \| Plant protein of unknown function (DUF828) \| chr3:20780410-20782931 FORWARD LENGTH=487