barSeed - Barley Seed Development Database

Probe CUST_19168_PI390587928

Source Contig U35_49968

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_19168_PI390587928	Hv_44K_v2	ATCCAAACAAGTACCCTGTTAAAGGCCACGAAATGTAAAAGTCAAGCAGCTATATGCCCT	512	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_42273.1	350	2e-24	281 - 340	100	60 / 60	minus	None
MLOC	MLOC_26884.1	364	2e-24	274 - 333	100	60 / 60	minus	None
MLOC	MLOC_783.1	216	2e-24	86 - 145	100	60 / 60	plus	None
JLOC1	JLOC1_18216.1	366	8e-25	275 - 334	100	60 / 60	minus
JLOC1	JLOC1_478.1	213	8e-25	85 - 144	100	60 / 60	plus
Harvest21	ABC51947	572	3e-25	513 - 572	100	60 / 60	plus
Harvest21	ABC26025	655	3e-25	512 - 571	100	60 / 60	plus
Harvest35	U35_49968	572	3e-25	513 - 572	100	60 / 60	plus
Harvest35	U35_13140	655	3e-25	512 - 571	100	60 / 60	plus

Contig Sequence (572 bp)

>U35_49968 572 Hv_44K_v2
AAGTATCCCTCCCCTTCTCCTACTCTCCCCCGTATCCCTCCCCTTCTCCTGCTCTCCCTC
CCAGCGGCGGCCGCCTCATCGGCGGCGAGCCTCGTCGGATGCGCTCCTCGACGGCTTCGG
GTACCTCCCCGCGCGGCCCTTGGGCCAAGAAGGACACCATCGACAAGGTGTGCGGGATCG
TCAAGAAGGAGCTGGTCGTCGCCCAAGACACCCTCGTCAACGGGGACACAAAGTTCGCCG
ACCTCGGCGCAGATTCCCTCGACACGAGAATTAAAGAAATTGTGTGTGCAGCTGAGCTGA
GGCTCGATAAGGTGTCGCTTTGGTTGGTTCTGTCTCGCTCGAATCGCCTTGGCCTGTTAA
AAAGCGCTCCACAGCGCCTCCAAACTCCAAGCCTCCAACGTACACGACCCTCAGCATCCG
ATCGACCAACGACGGTGGTTCGGTTACTACAGTGTCACAGACTAGTCGTGCTACCTTCTA
AGTGGTTACTAATTGTAGTAAGTTTACTGAACATCCAAACAAGTACCCTGTTAAAGGCCA
CGAAATGTAAAAGTCAAGCAGCTATATGCCCT

Homology of Contig U35_49968 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None