barSeed - Barley Seed Development Database

Probe CUST_19166_PI390587928

Source Contig U35_10049

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_19166_PI390587928	Hv_44K_v2	GGTGCAGAAGCAATATCTGATGAGCAGAAAAGTGAAATTACTGAACCAGTTATGGGCAAT	569	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_11261.1	2890	7e-23	1990 - 2049	98	59 / 60	minus	ABC17190
JLOC1	JLOC1_7444.6	12121	4e-23	10772 - 10831	98	59 / 60	plus
JLOC1	JLOC1_7444.5	12034	4e-23	10685 - 10744	98	59 / 60	plus
JLOC1	JLOC1_7444.4	11453	4e-23	10104 - 10163	98	59 / 60	plus
JLOC1	JLOC1_7444.3	11495	4e-23	10146 - 10205	98	59 / 60	plus
JLOC1	JLOC1_7444.2	10619	4e-23	9270 - 9329	98	59 / 60	plus
JLOC1	JLOC1_7444.1	11453	4e-23	10104 - 10163	98	59 / 60	plus
Harvest21	ABC22097	629	3e-25	570 - 629	100	60 / 60	plus
Harvest35	U35_10049	629	3e-25	570 - 629	100	60 / 60	plus

Contig Sequence (629 bp)

>U35_10049 629 Hv_44K_v2
GGAACACTCATGATTTGGAAGCACCAGTATGCCAAAACAGTGTCCAAGGTGAAACTTCCA
GTGAACTGGTGGTACCTGGTGGATCTGGCCTGATTACAGAAATGGAAACAAGAGATATCA
AGCTGGGTGAAAAGGCAACCAATTCTGTTTGTCAGGAACATATGGAAGCGACAACACAGA
TTGAGGAAGGAAGCTTGAAGAGCAACCTTGATGACATAACAAGCCCAAAGGTTTCTCAAG
AGGAGGCATTAGAGGAAGGAAGAACAGACCTTCACCACAAGCATTTACCTGAAAATAGAA
GTTCTGATGCAGTATCCGGGCAAACACTCTTGTCGACAGAACCAAATATGGGTGATGAAA
AGGATTTGCCTAATAACACTGATGATCTTCAAAGTCCTCTGAGCACAAAAAGAGAAGAGT
CCAATGAATCTTCCATCATTGAGGGCGAAAGTACTGTAGAGGCAGAACTGGAGAATGGAG
TAGACAAGGAAGAAGAGAATCAGCAGATAACTACCACAGGTGGAGCTACAGAAGAACAGA
TAGAAAATATGCATGATATCTCGCACAAAGGTGCAGAAGCAATATCTGATGAGCAGAAAA
GTGAAATTACTGAACCAGTTATGGGCAAT

Homology of Contig U35_10049 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi3g02910.1	2964	6e-71
Arabidopsis v10	None