barSeed - Barley Seed Development Database

Probe CUST_19149_PI390587928

Source Contig U35_49970

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_19149_PI390587928	Hv_44K_v2	TTCGAAGAAATGCCCTGCCCCTGCACAATCTCTTGGACCGCGCTCATCACCGCGTATATG	419	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_64029.1	4122	2e-24	1764 - 1823	100	60 / 60	minus	ABC18049
JLOC1	JLOC1_42001.1	1534	8e-25	811 - 870	100	60 / 60	minus
Harvest21	ABC51950	599	3e-25	420 - 479	100	60 / 60	plus
Harvest35	U35_49970	599	3e-25	420 - 479	100	60 / 60	plus

Contig Sequence (599 bp)

>U35_49970 599 Hv_44K_v2
CTCCCACAACGCTCGCGCCTGGCGCTTTTCTGTCGTCCGCCGCCGAGAAAACCCGCCGAC
TCCTCATCAGCGCCGTCAGCTCCAGCGACCGCCTCCCACCTCTCACCGTCAAACTGCTCC
ACGGCCGCCTCCTCCGGCTCGGCCTCCTCGCCGACCTTTACACGTTCCTCCTTCGCGCGC
TCTCCTCCTCAGGCCTCCACCTCCATGCCCTCTACCTATACTCCCTCTTTCCCGACCCCT
CCCACCTGGCCTTGCCGGTTGCCCTCAAGTCCGCCTCCCGCCTCCCCAACCCTCTCAAAG
CCGGCGAGCAGCTGCACGCCCGCTCCCTCAAGCTCCCTTCCCACTCCAACCCCCACATTC
TCACGTCCCTGCTAAAACTTTACGCCAAATGTGGGCTTTTGCAGCACGCACGGAGCGTGT
TCGAAGAAATGCCCTGCCCCTGCACAATCTCTTGGACCGCGCTCATCACCGCGTATATGG
ACGTGGGGTGTGCCAAGGAGGCCGTTGCCATTGCGAGGGATGTGTTGGCGAGTGGAATGC
GTCCGGACAGCTTCATGGCTGCGCGGGTCCTGACTGCGTGCGCCCGGGTCGAGGATTTA

Homology of Contig U35_49970 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os11g01836.1	646	3e-63	protein\|pentatricopeptide, putative, expressed
Brachypodium v1_2	Bradi4g44707.1	650	9e-63
Arabidopsis v10	None