- Probe CUST_19137_PI390587928
- Source Contig U35_49977
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_19137_PI390587928 | Hv_44K_v2 | TTGCAAAAATGCTTAAGCTTCCAAGCCAATTTCTGTCAGATGCACCTGGTGGAGGAGTAA | 557 | GeneList: yellow MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 2.452 | 1.924 | 1.059 | 0.818 | 0.584 | 0.339 |
| Raw | 44.175 | 52.989 | 26.331 | 27.648 | 6.971 | 3.524 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK361266 | 1845 | 2e-24 | 510 - 569 | 100 | 60 / 60 | plus | None |
| MLOC | AK360932 | 2011 | 2e-24 | 550 - 609 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_77509.3 | 1021 | 2e-24 | 392 - 451 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_77509.7 | 1053 | 2e-24 | 265 - 324 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_77509.1 | 1096 | 2e-24 | 467 - 526 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_77509.9 | 712 | 2e-24 | 265 - 324 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_77509.10 | 896 | 2e-24 | 265 - 324 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_77509.8 | 646 | 2e-24 | 266 - 325 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_77509.6 | 708 | 2e-24 | 338 - 397 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_77509.4 | 1136 | 2e-24 | 504 - 563 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_77509.2 | 1100 | 2e-24 | 471 - 530 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_77509.5 | 1221 | 2e-24 | 429 - 488 | 100 | 60 / 60 | plus | None |
| JLOC1 | JLOC1_51692.7 | 957 | 8e-25 | 325 - 384 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_51692.6 | 938 | 8e-25 | 306 - 365 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_51692.5 | 999 | 8e-25 | 367 - 426 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_51692.4 | 1064 | 8e-25 | 476 - 535 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_51692.3 | 1361 | 8e-25 | 736 - 795 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_51692.2 | 1418 | 8e-25 | 786 - 845 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_51692.1 | 943 | 8e-25 | 504 - 563 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC52291 | 575 | 3e-25 | 402 - 461 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC51957 | 625 | 3e-25 | 558 - 617 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC14959 | 1010 | 3e-25 | 283 - 342 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_49977 | 625 | 3e-25 | 558 - 617 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_6164 | 1129 | 3e-25 | 402 - 461 | 100 | 60 / 60 | plus |
Contig Sequence (625 bp)
>U35_49977 625 Hv_44K_v2 ATTGTGGTTGTAGCCGCTCTAAACCCCAACCGAGAAAATCCATTCCCTTCTCTCCTTCCT CCCACGTCTCGCGCCTCTCTCCCCACCACCGTATCCTCTTCTTTTCCCTCCTGCCATCGC GTTGCAAACCCTCACAATCATGGAAGGGGGCGGTACCAGCTATGGCGGGGACGACGGCGG GTCGCTCCGGCCGATGGACGCGGAGCAGCTACGGGAGTGCGGGCACCGGATGGTGGATTT CATCGCCGATTACTACAAATCCATCGAGAGATTTCCCGTCCTCAGCCAAGTCCAGCCAGG ATATCTAAAGGAACTTCTTCCAGATTCAGCTCCTAACCGACCTGATACTTTGGATACCCT TTTTGATGATATTCGTGAGAAGATCATACCTGGAGTCACTCATTGGCAAAGTCCAAGTTA TTTTGCATACTATCCCTCAAATAGCAGCACTGCTGGATTCCTGGGGGAGATGCTTAGTGC TGCCTTTAACATCGTTGGCTTCAGTTGGATAACCTCTCCTGCTGCAACTGAGCTAGAGGT TATAGTCTTAGACTGGTTTGCAAAAATGCTTAAGCTTCCAAGCCAATTTCTGTCAGATGC ACCTGGTGGAGGAGTAATCCAGGGT
Homology of Contig U35_49977 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | Bradi1g28960.1 | 486 | 7e-92 | |
| Arabidopsis v10 | AT2G20340.1 | 490 | 1e-77 | Pyridoxal phosphate (PLP)-dependent transferases superfamily protein | chr2:8779804-8782490 FORWARD LENGTH=490 |