barSeed - Barley Seed Development Database

Probe CUST_19122_PI390587928

Source Contig U35_22039

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_19122_PI390587928	Hv_44K_v2	CCCTACAATAAGTGAGTTCAAGAAAACATTTGATGAAGACAACAAATTGTTTCACCTTGC	1177	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_20879.1	1593	2e-24	913 - 972	100	60 / 60	minus	ABC11198 ABC16321
MLOC	AK360437	2926	7e-23	1844 - 1903	98	59 / 60	plus	ABC05260 ABC11198 ABC16321
JLOC1	JLOC1_14476.1	1547	8e-25	641 - 700	100	60 / 60	plus
Harvest21	ABC16321	1243	3e-25	1178 - 1237	100	60 / 60	plus	ABC16321
Harvest35	U35_22039	1243	3e-25	1178 - 1237	100	60 / 60	plus

Contig Sequence (1243 bp)

>U35_22039 1243 Hv_44K_v2
GATCCGCGCCACTTCCTTCTCCAGCAATGTCCATTCCCGCCCTCCGCTCCTTCCCCGCCG
TCTACGGCGTGAAGCCGGCCGGCCGCCTGGTCCGACACCATTCCCGGCTCGGCGGCGGCC
TCCGGGCCAGCTCCGTCGCTGTGAACGGGGAGGTGGGGCCGAGAACCAAGGGCGGGAAGA
AGGAAGAACCGGCGAAGGAGGAGGACAGAGGGCTGGAGCCCCTCTACGACGATGGGTTCG
GGGGCGTGACCGTCAAGGACTACTTCGCGGCCGCCAGGGCCCTGTGCAAGGACGACGGAG
GGCCGCCGCGGTGGTTTTGCCCCGTGGAGTCAGGCCAGCCGGCGGTGGAGGACGCGCCCC
TGCTGCTCTTCTTGCCAGGAACTGACGGTGTTGGGATGGGACTCATTTTGCACCACAAGT
CTTTGGGCAAGGCCTTCGAAGTTCGTTGTTTGCATATACCAGTAAATGATCGTACACCAT
TTGAAGGGCTACTACAAATTGTTGAACAATCTATCCAATATGAGCATGATTTATCACCAA
ACAGACCAATATATCTTGTTGGAGATTCCTTTGGTGGATGTCTGGCACTTGCAGCGGCAG
CTCGTAATCCAGACATTGATTTGGTCCTCCTACTGGTAAACCCAGCAACATCATTTGCAA
GGACTCCATTGCAGCCAATATTGCCCCTTTTGGAAGCAATGCCAAGCGACCTTCATGTTA
CAGTTCCGTACCTTCTTAGTTTTGTTATGGCTGACCCTCTGAAGATGGCTATGGTTAGCA
TTGAGAACAACCTTTCTCCTCCAGAAACTCTTCAAAAGCTGTCAGAAAGTCTCACTTCCT
TGCTGCCTTTGCTTTCACAATTGGCAGATATCATACCAAGGGATGCTCTTTTGTGGAAGC
TCAAGCTTCTTAAGTCAGGAGCAGCCTATGCGAACTCTCGTCTTCATGCTGTACAAGCTG
AAGTTCTGTTTATTGCCAGTGGCAAAGACAATCTTCTTCCGAGTGGAGAAGAGGCGGATC
GACTCTTCAAGGCACTGAAAAACTGCAGGGTTCGATACTTCAAGGACAATGGCCATACAC
TACTCTTGGAGGATGGTGTGAATCTGTTATCTGTTATAAAAGGTGCAAATATGTACCGCC
GTGGCAGGCAACGGGACTTTGTGACCGACTACCTTCCCCCTACAATAAGTGAGTTCAAGA
AAACATTTGATGAAGACAACAAATTGTTTCACCTTGCACTGAG

Homology of Contig U35_22039 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g26039.1	699	0.0	protein\|expressed protein
Brachypodium v1_2	Bradi2g12850.1	697	0.0
Arabidopsis v10	AT1G54570.1	704	9e-141	Esterase/lipase/thioesterase family protein \| chr1:20380649-20384953 REVERSE LENGTH=704