barSeed - Barley Seed Development Database

Probe CUST_1911_PI390587928

Source Contig U35_5733

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_1911_PI390587928	Hv_44K_v2	CCGACCCGGCCGCCGTCAAGGACGCCCTCGGGCCCCTCACGGACGTCACCCACGTCTTCT	430	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_10046.3	1615	2e-24	429 - 488	100	60 / 60	plus	ABC06313
MLOC	MLOC_10046.1	3061	2e-24	2355 - 2414	100	60 / 60	minus	ABC06313
MLOC	MLOC_10046.2	1872	2e-24	1140 - 1199	100	60 / 60	minus	ABC06313
MLOC	MLOC_10046.4	1691	2e-24	960 - 1019	100	60 / 60	minus	ABC06313
JLOC1	JLOC1_6547.1	1575	8e-25	566 - 625	100	60 / 60	plus
JLOC1	JLOC1_6548.1	2332	8e-25	1623 - 1682	100	60 / 60	minus
Harvest21	ABC15616	474	3e-25	406 - 465	100	60 / 60	plus
Harvest35	U35_5733	530	3e-25	431 - 490	100	60 / 60	plus

Contig Sequence (530 bp)

>U35_5733 530 Hv_44K_v2
AACAACTCCACTCTCTCCCCATTATCTCCTCGCAGATCCAGCCGGACCTCCCCTCCCCTC
CCCACCGCCCGATCTCGACGCCTCCGACGGTGACCTGCAGCCGCGACGAACAAGCTGACC
GCCGGCAATCCCTAACCCCCCTCCAGCCGGATCCGCTCCGCCCCCGCGATGAGCTGGTGG
TGGGCGGGCGCGGTGGGGGCCGTCAAGAAGCGGCAGGACGAGCGGGCGGCGGCGGCCGAG
CCCACCTTCCAGAGCGTCGCGCTCATCCTCGGCTCCACGGGGATCGTCGGCACCTCCCTC
CTCGACATCCTCCCCCGCGACGACACCCCGGGCGGGCTATGGAAGGTGTACGCGGTCTCC
CGCCGCGCGCCGCCGGCCTGGTCGACCCCGCCGCCGTCCCCCGCCGTCACGCACCTCCAG
CTCGACCTCGCCGACCCGGCCGCCGTCAAGGACGCCCTCGGGCCCCTCACGGACGTCACC
CACGTCTTCTACGCCGCCTGGTCCAGCCACGAGACGGAGGACCGGAACCG

Homology of Contig U35_5733 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None