- Probe CUST_19109_PI390587928
- Source Contig U35_49986
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_19109_PI390587928 | Hv_44K_v2 | ATTGGATGCAGCGAATGAAAATTGCTGTTGATGCTGCCAAAGGACTTGAATACCTGCACG | 461 | GeneList: lightyellow MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.290 | 0.398 | 1.049 | 1.717 | 1.122 | 1.196 |
| Raw | 23.430 | 49.883 | 115.575 | 310.915 | 68.861 | 80.193 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK366613 | 1496 | 2e-24 | 605 - 664 | 100 | 60 / 60 | plus | ABC10854 |
| MLOC | MLOC_75774.2 | 1672 | 2e-24 | 725 - 784 | 100 | 60 / 60 | plus | ABC10854 |
| MLOC | MLOC_75774.3 | 1501 | 2e-24 | 556 - 615 | 100 | 60 / 60 | plus | ABC10854 |
| MLOC | MLOC_75774.1 | 2399 | 2e-24 | 1323 - 1382 | 100 | 60 / 60 | plus | ABC10854 |
| JLOC1 | JLOC1_50540.2 | 1613 | 8e-25 | 556 - 615 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_50540.1 | 1593 | 8e-25 | 556 - 615 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC51969 | 547 | 3e-25 | 462 - 521 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC28814 | 702 | 3e-25 | 589 - 648 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC10855 | 652 | 3e-25 | 592 - 651 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC10854 | 1427 | 3e-25 | 584 - 643 | 100 | 60 / 60 | plus | ABC10854 |
| Harvest35 | U35_49986 | 547 | 3e-25 | 462 - 521 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_13642 | 2023 | 3e-25 | 592 - 651 | 100 | 60 / 60 | plus |
Contig Sequence (547 bp)
>U35_49986 547 Hv_44K_v2 GACGAAGCCGACGAAAGTAAGCAACGCCGCCGACCCCTCGAGGGGTGAAACAAGACAAAG AGAGAGTAATGTGGCGTCGCTGCATTTGCTGTCAAGCCGCTGAGTTTGATGAGAATGAAA ATGGGCGTGCCAAGTCCAAGGCCAAGGCCCCAACAAATAACGTAGATGGAATGAAAAAGG GTTTGAAAGATTCAGCTACTGTGAAAGCAGAGCCACAAGATTCAGCTCCCTCTATCAATA TTCCTGTTCTATCTTTGGATGAATTAATTGAAAAGACTGATGATTTTGGGGCAAAGGCTT TAATAGGCGAAGGATCTTATGGGAGAGTGTACTACGCTGTGCTTGATAATGGGACAAAAA TGGCAGTGAAGAAACTTGATTCTACTGAAAATGAGCCCATATCAGAATTCTCGACTCAGG AAGAAAAGGAGTACAAGGTGCACAACCTGGTCCACCACTTAATTGGATGCAGCGAATGAA AATTGCTGTTGATGCTGCCAAAGGACTTGAATACCTGCACGAGAAGGTCCAGCCTTCTAT TGTACAT
Homology of Contig U35_49986 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |