barSeed - Barley Seed Development Database

Probe CUST_19104_PI390587928

Source Contig U35_22040

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_19104_PI390587928	Hv_44K_v2	GTTGAGGAGGCAGTTTGTTATTCAGAACATAGCGCTGTCAAATGTATCGGTATGACAATT	734	GeneList: tan MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.694	0.613	2.003	2.881	1.116	1.015
Raw	24.546	36.326	97.475	226.169	30.877	29.650

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK356100	2124	2e-24	736 - 795	100	60 / 60	plus	ABC17371
MLOC	MLOC_10889.1	1707	2e-24	1294 - 1353	100	60 / 60	minus	ABC17371
JLOC1	JLOC1_7162.1	1856	8e-25	472 - 531	100	60 / 60	plus
Harvest21	ABC17060	739	3e-25	680 - 739	100	60 / 60	plus
Harvest35	U35_22040	794	3e-25	735 - 794	100	60 / 60	plus

Contig Sequence (794 bp)

>U35_22040 794 Hv_44K_v2
AGGTCCCAGTTTCGTCCCTCCCTCCCCCCGAGGCAAAAAAAAAAAACCCTTCGCTGAAAC
CCTTCCCGATGGCCGCCGCCGTAGCCGCAGCAGCGGCCGACCAGCCGCGCCGCCGGAAGC
CAACGCCGGGGCGCGGGGGCGTGGTGCTGCCCGCGGGACTCTCCGAGGAGGAGGCGAGGG
TGCGGGCCATCGCGGAGATCGTGTCGGAGATGGGCGAGCTCTCGCGCCGCGGGGAGGACG
TGGACCTCAACGCGCTCAAGTCGGCCGCGTGCCGGCGCTACGGGCTCGCCCGCGCGCCCA
AGCTGGTGGAGATGATCGCCGCCGTGCCGGAGGCGGACCGCGCGGCGCTGCTGCCCCGCC
TGCGCGCCAAGCCCGTGCGCACGGCCTCGGGCATCGCGGTGGTCGCCGTCATGTCCAAGC
CGCACCGGTGCCCCCACATCGCCACCACGGGGAACATCTGCGTCTACTGCCCGGGAGGCC
CCGACTCCGACTTCGAGTACAGCACCCAGTCCTACACTGGATACGAGCCCACCAGCATGC
GCGCTATCCGGGCAAGGTACAATCCATATGTGCAGGCCCGGAGCAGGATAGATCAGCTCA
AAAGGCTCGGACATAGCGCGGATAAGGTCGAGTTCATTTTGATGGGTGGGACTTTCATGT
CATTGCCGGCTGATTATCGTGATTATTTCATCAGAAATCTCCATGATGCTTTATCGGGGC
ATACTTCTGCTAATGTTGAGGAGGCAGTTTGTTATTCAGAACATAGCGCTGTCAAATGTA
TCGGTATGACAATT

Homology of Contig U35_22040 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g40840.1	574	2e-128	protein\|elongator complex protein 3, putative, expressed
Brachypodium v1_2	Bradi5g13790.2	521	2e-130
Arabidopsis v10	AT5G50320.1	565	7e-115	\| Symbols: ELO3, HAG3, HAC8, ELP3, AtELP3 \| radical SAM domain-containing protein / GCN5-related N-acetyltransferase (GNAT) family protein \| chr5:20481200-20484811 REVERSE LENGTH=565