barSeed - Barley Seed Development Database

Probe CUST_19101_PI390587928

Source Contig U35_22043

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_19101_PI390587928	Hv_44K_v2	GCAGAGTTCAAGTTTCTGTAGGGTTTAGCATATGCATTTGCTAATACATTTATGTGTTCT	1486	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_66915.1	2686	2e-24	149 - 208	100	60 / 60	minus	ABC15850
JLOC1	JLOC1_44147.1	1888	8e-25	1747 - 1806	100	60 / 60	plus
Harvest21	ABC15850	1548	3e-25	1487 - 1546	100	60 / 60	plus	ABC15850
Harvest35	U35_22043	1548	3e-25	1487 - 1546	100	60 / 60	plus

Contig Sequence (1548 bp)

>U35_22043 1548 Hv_44K_v2
GGGCAGCACTAGAAGAAGAGAACGTACAGCTAAAGGAGTCGCTTGAAGAGAAGACAAACG
CTTTAGATCTTCTCATTCAGGAGCACCAGGCGGCTAAAGCAGAACTTGAACGGGTGCTGA
CGAAACTGAAAGCTGTGGAGCATGAGAACACTCAGCTGGTCGAGCGATTGATGCAAGCAA
AGATGGTGGAGGCAGAGAAGCTTAATGAGGCCAATGCGATGTATGAGGAGATGGTCCTAA
AGCTCAAGGCAGCTGGGCTTGGCGCTGGCGGAATACAACACAATGCACAGCAAGAAGCTG
ATGGCGTCATTCGTCGGTCTGAAGCTGGATATGTCGACATCATGGAAACACCAATCCCAT
CTACATGCAGGGTCACCATCCGTGCTCATGATGGTGGGTGTGGATCTATAATTTTTCAGA
ATAACACAGATAAGCTAATCAGTGGTGGCCAGGATCAAACTGTCAAGATATGGTCTGCAC
ATACCGGTGCTTTAACCTCCACTCTGCAGGGTTGCTTGGGGACTGTCAACGATCTTGCTG
TGACCAATGATAACAAGTTTGTGATTGCCGCCTGTAGCTCTAACAAGTTGTTTGTATGGG
AAATTAATGGGGGGCGTCCTCGTCACACTCTGACTGGCCACACAAAAAATGTCTGTTCTG
TAGGCGCAAGCTGGGCGAAAAGTTTGGTCATTGCTAGTTCATCCAATGACCGCACTATCA
AGATCTGGGATCTCCAGACTGGCTTCTGTAAAAGCACCATAATGTCAGCAAGCAACCCCA
ATACGCTAGCTTTCATCCATGGCGATTCCATTTGCTCAGGTCATAGGGATGGAAGCCTGA
AGTTCCACGATATCCGCAGTGGAAAATGCTTTGCCACGGTAGCAGGTCATGCCGATGTCA
GCTCGGTCTGTGTAACCCGGAGCAAAAATCATGTTCTTTCAAGTGGGAGAGACGGTGTGC
ACAAGCTTTTTGATGTTAGAATGCCGACGGAGGTAGTGGAGATTTGTGGAACATTCAGGG
CCCCGAGTAACAGATTGATTGGCAGCTGGGGCAGAGCTTGTATAAGCCCGGATGAGAACT
GCATAGCGGCTGGCTGCTCTGATGGGTCCGTTTGCATATGGTCGAGGTCGAAGAACGAGG
GTCCGACCATCCTAGAGGGCCATTCGCTGCCGGTTGTTACAAGTGCATGGTCTGAGTTTG
GACCTCTTGCCACCGCCGACAAGAATCATATTCATATATGGGCTTGAGACCTGCGTTTCC
TTTGGTCATTCAAACCAGGATGTGGAGAGTTTCACTTTTATGTGGTATTGCTCGTTTACG
GCCATTCTTGAGGACACTCGTTTGCATGTAAATGACTTAGTTAGTGTCTAATCAATTGTA
AATATCAAAACTGACAGCACGGTACAGTCTGTCAACTTTCCTCATGCGTTTTTAGGGGAT
TTCATTTATCTGTTGCCGGTAAAATGAAGGGTTTGGGAGTTCTTCGGCAGAGTTCAAGTT
TCTGTAGGGTTTAGCATATGCATTTGCTAATACATTTATGTGTTCTTA

Homology of Contig U35_22043 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g53510.2	510	0.0	protein\|WD domain, G-beta repeat domain containing protein, expressed
Brachypodium v1_2	Bradi1g08830.1	510	0.0
Arabidopsis v10	AT5G50230.1	509	4e-125	Transducin/WD40 repeat-like superfamily protein \| chr5:20448632-20450855 REVERSE LENGTH=509