barSeed - Barley Seed Development Database

Probe CUST_19096_PI390587928

Source Contig U35_22048

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_19096_PI390587928	Hv_44K_v2	CCATGACGCATGTATTATTTTGGAAGCCAAACTATGTTTCCATCTGTATCAAAGATATAC	379	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	3.436	2.728	1.434	0.582	0.347	0.364
Raw	142.865	192.454	82.359	55.840	10.417	12.733

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK360624	1712	2e-24	1623 - 1682	100	60 / 60	plus	ABC18518
MLOC	MLOC_78357.3	1121	2e-24	805 - 864	100	60 / 60	minus	ABC18518 ABC41766
JLOC1	JLOC1_52224.2	1962	8e-25	1647 - 1706	100	60 / 60	minus
JLOC1	JLOC1_52224.1	1954	8e-25	1639 - 1698	100	60 / 60	minus
Harvest21	ABC18518	504	3e-25	380 - 439	100	60 / 60	plus	ABC18518
Harvest35	U35_22048	504	3e-25	380 - 439	100	60 / 60	plus

Contig Sequence (504 bp)

>U35_22048 504 Hv_44K_v2
GGCGGAGGCGCCGGAGCCGGCGGCGGTTTCGGAGGAGGCAAGGGCGGCGGATTCGGCGGC
GGCGTAAGCGGAGGAGGCGGCAAGGGCGGAGGCTTCGGCGGGGGATTCGGCGGTGGTGGG
GGCGCGGGCGGCGGCGGCGGCATCGGTGACGGGCAGTGAGGCCGGCCCGGAGAACGCGCG
CATGCACGTCGCGGGCGCTTCGGTGGGTCCATGCATGCAGGGAGACGTGCGTGACGCGCG
CGCCATGGGGAGCAAAGCAAGCAAGCAAGCAATCTTGGTAGCCTACGTATATGCGAATAA
ATTTGTTGGGTGGTGAGCGATGAGTACGTGACGTGACAATGACATTCCTTTTCCTTGTGT
ATCCATGATACTGTTATTACCATGACGCATGTATTATTTTGGAAGCCAAACTATGTTTCC
ATCTGTATCAAAGATATACTTATATATTACTATACAAACAGATTTATAAAAAAAATTATT
AATAATAAAAAAAAAAAAAAAAGG

Homology of Contig U35_22048 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None