- Probe CUST_1908_PI390587928
- Source Contig U35_5736
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_1908_PI390587928 | Hv_44K_v2 | ATCAGAAGATGATTCGTGAGTGCTGGCCTCTTTTTACATGTTTCAACGAACATTTGGTGT | 384 | GeneList: greenyellow MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 5.131 | 4.055 | 1.059 | 0.463 | 0.470 | 0.849 |
| Raw | 172.198 | 195.098 | 47.561 | 31.258 | 12.137 | 23.576 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_71159.1 | 3219 | 2e-24 | 3116 - 3175 | 100 | 60 / 60 | plus | None |
| JLOC1 | JLOC1_47260.1 | 3040 | 8e-25 | 2976 - 3035 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_5736 | 470 | 3e-25 | 385 - 444 | 100 | 60 / 60 | plus |
Contig Sequence (470 bp)
>U35_5736 470 Hv_44K_v2 TGAAGACGCTGAAACTCGCATTGCATTGCGTCGATCCTTCGCCCGTGGCACGGCCCGAGG CGCAGCAGGTATTGCGGCAGCTCGAGCAGATCAGGCCCTCGATTGCGGTCTCCGCCACCT CGTCCTTCACCGGCGAGCCGAGCCATACTACTGCGACCGCCACTACCATCACCGATGATA CAAGATCCACCACCACAGAGTAGTCAGCCTCTTGCAGACTGAAAGAAAATCCCAGCTCTT AGTTTCTTCAGACTATTAATAAGTAGACTCCAGAGTCTATTTTTCAGTCTGTATATAGAG TTCTTAGAGGGCAAGAGAGTTTTGGTGCCCGTGTCATTCTTTCATTCCTAAATTCATTTG TATCTGGCAGAAGCACTCCTTGTTATCAGAAGATGATTCGTGAGTGCTGGCCTCTTTTTA CATGTTTCAACGAACATTTGGTGTTTCAAAAAAAAAAAAAAAAAAAAAAA
Homology of Contig U35_5736 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |