barSeed - Barley Seed Development Database

Probe CUST_19082_PI390587928

Source Contig U35_10074

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_19082_PI390587928	Hv_44K_v2	TTGTCGTGTTATTCAGAGAATCCTCGAGCATTGCAGTAATGGTTCAGATGGTATAATAGA	682	GeneList: darkgreen MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.987	1.202	1.593	1.331	0.693	0.692
Raw	280.362	527.820	610.776	784.293	146.052	160.599

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_37686.2	3589	2e-24	2599 - 2658	100	60 / 60	plus	None
MLOC	MLOC_37686.4	3890	2e-24	2900 - 2959	100	60 / 60	plus	None
MLOC	MLOC_37686.3	3537	2e-24	2468 - 2527	100	60 / 60	plus	None
MLOC	MLOC_37686.1	3551	2e-24	2482 - 2541	100	60 / 60	plus	None
JLOC1	JLOC1_24427.2	3596	8e-25	2509 - 2568	100	60 / 60	plus
JLOC1	JLOC1_24427.1	3569	8e-25	2482 - 2541	100	60 / 60	plus
Harvest21	ABC19342	801	3e-25	683 - 742	100	60 / 60	plus
Harvest35	U35_10074	802	3e-25	683 - 742	100	60 / 60	plus

Contig Sequence (802 bp)

>U35_10074 802 Hv_44K_v2
CAACTCCAGTGTTTCATGGCCAACCTTCATCAGGAACATATCCCTGTGACAGGAGAAATA
ATGCACCGGGATTCCAGTCCCCATCAAAAACTACAGGCCTTAGTCCTGGGATTCAAGAGC
AGCGAGCGAGGGAGAAATCTGGTCCCAACACACACTTTTTTGTTGGTGAAGTAAGGTCCA
ACAAAGCTCACATGGTTGAGTTATCTGACATCAAAGGCCATATAGCGGAATACAGCTCTG
ACCAAGATGGCAGTCGATTCATTCAGCAGAAGCTGGAGAATGGTACCACTGAAGACAAGG
CCTTGGTGTTTGATGAAATCCTTCCTCATGCTTCATCGTTGATGACTGATGTATTTGGAA
ACTATGTGATCCAAAAGATGTTTGAACATGGGGACTCTGAGCAGAGAAGAGACCTTGCAA
AAAAGCTTGCTGGCCATGTGTTAAATTTGAGCCTTCAGATATATGGTTGCCGAGTATTTC
AGAAGGCCCTTGAAGCAATTGAGCTTGATCAAAAGATAGAACTTGTTTGTGAACTTGATG
GACATGTTCTAGAATGCGTTCGCGACCAAAATGGGAATCATGTTATACAGAAGTGCATTG
AGTGTGTCCCTGTGGAGCATATTGGCTTTGTGGTGTCGGCTTTTCAGGGACAGGTTGCCA
CCCTAGCAATGCATCCATATGGTTGTCGTGTTATTCAGAGAATCCTCGAGCATTGCAGTA
ATGGTTCAGATGGTATAATAGATGAAATCTTGCAGTCTGCTTGCACCCTGGCACAAGATC
AGTATGGAAATTATGTCACACA

Homology of Contig U35_10074 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g40830.3	1007	3e-124	protein\|pumilio domain-containing protein PPD1, putative, expressed
Brachypodium v1_2	Bradi3g40520.1	1032	6e-121
Arabidopsis v10	AT3G20250.1	961	1e-95	\| Symbols: APUM5, PUM5 \| pumilio 5 \| chr3:7059098-7062660 REVERSE LENGTH=961