barSeed - Barley Seed Development Database

Probe CUST_19076_PI390587928

Source Contig U35_10077

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_19076_PI390587928	Hv_44K_v2	ACCTTCAGATTCTTGGCTTTCTCGCAATTTGCCATCTGTGAAGAATAAACTGATTGCGCC	935	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_56966.2	2800	7e-23	1863 - 1922	98	59 / 60	minus	ABC47697
MLOC	MLOC_56966.3	2611	7e-23	477 - 536	98	59 / 60	minus	ABC47697
MLOC	MLOC_56966.1	2973	7e-23	931 - 990	98	59 / 60	minus	ABC47697
MLOC	MLOC_56966.4	3038	7e-23	654 - 713	98	59 / 60	minus	ABC47697
JLOC1	JLOC1_36869.5	2761	4e-23	1809 - 1868	98	59 / 60	plus
JLOC1	JLOC1_36869.4	3015	4e-23	2063 - 2122	98	59 / 60	plus
JLOC1	JLOC1_36869.2	2596	4e-23	2063 - 2122	98	59 / 60	plus
Harvest35	U35_10077	995	3e-25	936 - 995	100	60 / 60	plus

Contig Sequence (995 bp)

>U35_10077 995 Hv_44K_v2
ACTTCGACGTACATAGTACCCGAGGTTTTGCATCCAAGGGGTGTGGTTTGCTCCCTGGTT
TGTGTGTTAAAACCTCCTTGTTACTACTGAATCCAATGCCTATGATGAAGGGTGGCAAGG
CACGCCGAGGAGGCAGAGGCAGGGGATTGACATCCAGAGGCAGGGGCCAGGACGCACCGA
GCCCTCTTGGCCGCAGCTCACAACCAATACTGGGAGGAAGTTTATAAGCACAAGCTGGAA
CGGAAGTACATTAACCAAGGAGAGGATAGGAGGAGCAAGCTGACAAGTGAGTCGAACCAT
CTGACATTCTGGAGTGACTCTCAGACTGGGGATGGGTCTTCACCATTCCGCCACTCCATA
GGTGGTGGCATGTCTCCCTACCGCCGCGATGTTGCCTTGTCACCATCGCAGAAAGCAAAT
GGGTCATTTGAAATAAGAGATAAAGATGAGAAAATGAGTAGAAGCAATGGCTCTAGCTCA
CTTGGAATAGACCAGGATCATGGTTCATTGCTTGGATCAGATCACAGTAGTTTGAAGGGA
TCAAGCTCCATGAGCTCTGGGATAGATAGACCATTGCACGGAGATTCAATGGATCACCGT
GCAGGTATTGATTCAGAAGCTAGTCAGTTGACCCTGCCACTGGATCCAAAGGCATCTTTG
AATTCAGGGTGTGATGTTCAACATGGAGGACACCAGATAGTCAGAAGTAACAGCATAGTG
GAAGTTCAAGACAATGATAGGTCTACAAAGACGGTCGCCAAAGTGCCAGAACTCATTTCA
TTAATACCTTCCGGAAACGCAGGGTCAGTAATACTGGATGATAGAAAAACTCATGATAGT
AGTCAGGATGTCCCAGTACATTCGGAAGATAATAGTGCTGTCAAGAAGGAAAGTATGCCT
TTGCAATTTCTAATGCCGTTACCTGTCCCAAAATCACCTTCAGATTCTTGGCTTTCTCGC
AATTTGCCATCTGTGAAGAATAAACTGATTGCGCC

Homology of Contig U35_10077 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g55410.1	683	7e-85	protein\|expressed protein
Brachypodium v1_2	Bradi2g50410.1	661	7e-100
Arabidopsis v10	None