barSeed - Barley Seed Development Database

Probe CUST_19069_PI390587928

Source Contig U35_46008

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_19069_PI390587928	Hv_44K_v2	CGCCTACTGATATGACTGAATACGAATATGTGGTGTGTCTTGTATTAGTATTTGTTTTTG	63	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_30918.2	323	2e-24	207 - 266	100	60 / 60	plus	ABC00852 ABC45519
MLOC	MLOC_30918.1	753	2e-24	637 - 696	100	60 / 60	plus	ABC00852 ABC45519
JLOC1	JLOC1_20394.1	819	8e-25	620 - 679	100	60 / 60	plus
Harvest21	ABC45519	566	3e-25	64 - 123	100	60 / 60	minus	ABC45519
Harvest35	U35_46008	566	3e-25	64 - 123	100	60 / 60	minus

Contig Sequence (566 bp)

>U35_46008 566 Hv_44K_v2
TTTTTTTTTTTTTTTTCAAAAGCTTTCCTTATTCGTAAGTCTAGTATTACTGTAACATTT
CATCAAAAACAAATACTAATACAAGACACACCACATATTCGTATTCAGTCATATCAGTAG
GCGGCGGCAGCTCCAGCAAAGTTGCGAAATAGCCTGGCCGCGTCCATGACGCCATTCGAA
ATAGCGACATGATCGTCATCCTCGTTGGCTTCGTCGTCCAGGAAGCAGTGCGCGGGCGCC
TGCCACTGGTCGTCCTCTTCCAGCACCACGCCCACCTCGAAGCTCATCACGAACTGCTGT
ATCCCCGTCACGTCAAGAAAGTTCCAGCGGACGGGGCGGCGCGTGAGCGCATCCTCGTAG
TAGACGATGAACCCTGCCTTGCCCCAGACGTGGCAGTCGATCCCGCCGGTGGTCTCACGG
CCGAGGTAGGCGGCGCCGCCGAGCCACCCCGGGGGGAGCACGTCGACGGCGACCTGCAGC
GTGCGGCACGTCGCCGTGTCGAAGTAGAAGGTGGTGCCGTTGTTCCACTCCACGTCGTAC
AGCGGGTCGCCCGACAGCTGGTGCCG

Homology of Contig U35_46008 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g29240.1	253	3e-57	protein\|expressed protein
Brachypodium v1_2	Bradi1g28140.1	229	4e-72
Arabidopsis v10	None