barSeed - Barley Seed Development Database

Probe CUST_19066_PI390587928

Source Contig U35_22051

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_19066_PI390587928	Hv_44K_v2	AGGTCGTAGTGGGAATATAGCTGCGAGGTGCCTAAACATTTTCAGGTTTCTTTCAAAAAA	797	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.730	2.023	1.159	0.834	0.445	0.554
Raw	1105.219	1962.402	1010.979	1142.294	213.333	288.460

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_14650.1	13813	9e-22	13706 - 13760	100	55 / 55	plus	ABC18043
JLOC1	JLOC1_10003.3	13280	5e-22	13192 - 13246	100	55 / 55	plus
JLOC1	JLOC1_10003.2	13405	5e-22	13317 - 13371	100	55 / 55	plus
JLOC1	JLOC1_10003.1	13541	5e-22	13453 - 13507	100	55 / 55	plus
Harvest35	U35_22051	865	3e-25	798 - 857	100	60 / 60	plus

Contig Sequence (865 bp)

>U35_22051 865 Hv_44K_v2
CTTTACAGGTTTCCGGTGGAGACAGCCCCCGGCGAGACTCGCATGCTACTCTCCAGTCAG
GTTTACTCGTTTAAGAGTGTTTCAACGGCTGACCTTTCCTCGGCACCTTCCCAACTGGAT
AGTGGTAGAGTGGCAGAAGTTGGACAACCAGGCCACTCGTCCGTTAGCGCTAGAACTGAA
GGCGCAGATGATACGGCTGCTGGGCTTGAATACGGCAAAGTATCTTCCACGGAGCTGGTA
CAAGCAGTCCATGATATGCTTTCAGCAGCAGGGGTAAGGATGGATGCTGAGAAGGAAACA
CTGCTACAGACTACCCTTTCCTTGCAAGACCAGCTTAAAGAATCTCAAGTGGCTCTCTTG
GTGGAGCAGGAGAAAGCCGAGTCAGCGGTGAAAGAAGCCGACATAGCCAAGGCGGCATGG
TCATGCCGCGTCTGCCTGAACTCCGAGGTGAACATGACCATCGTACCGTGCGGCCACGTC
CTGTGCAACAGGTGCTCGAGCTCGGTGTCGCGATGCCCATTTTGCCGGACCCAAGTGTCC
AAAATGATGAAGATATTCAGGCCATGAAGACACCGAGGGAGGGGCACCGGCCCGACATTC
TTCAGATCCCGCATTCTTTGCTCAACGAGCGTGTGTAAATATAAACCCCACTAGCAGTCC
AGTCCATGTACAGCACAGGCAGAGGCACAGCGCATTCTAGTTTAGTTTTAGACTTGGTGC
GACGCGACACGATACGATACGATGTAATAGTCTTCAGTATTTGAGTAGAAACTTATCAAT
TTCTGGAGCTGACCGAAAGGTCGTAGTGGGAATATAGCTGCGAGGTGCCTAAACATTTTC
AGGTTTCTTTCAAAAAAAGAAAAAA

Homology of Contig U35_22051 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi5g26017.1	4755	9e-90
Arabidopsis v10	None