barSeed - Barley Seed Development Database

Probe CUST_19062_PI390587928

Source Contig U35_23158

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_19062_PI390587928	Hv_44K_v2	ACAGCTCTGGGGTTTCAAGATGGATTTCCCACAAATGGTGAATAATACCATGGCGCGTAT	522	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK357750	2680	2e-24	2092 - 2151	100	60 / 60	plus	ABC19645
MLOC	MLOC_22257.1	1870	2e-24	1314 - 1373	100	60 / 60	minus	ABC19645
MLOC	MLOC_22256.4	2139	2e-24	2073 - 2132	100	60 / 60	minus	ABC19645
MLOC	MLOC_22256.3	4207	2e-24	3343 - 3402	100	60 / 60	minus	ABC19645
JLOC1	JLOC1_15429.1	1489	8e-25	504 - 563	100	60 / 60	plus
JLOC1	JLOC1_15428.3	3896	8e-25	3050 - 3109	100	60 / 60	minus
JLOC1	JLOC1_15428.2	4150	8e-25	3304 - 3363	100	60 / 60	minus
JLOC1	JLOC1_15428.1	4299	8e-25	3453 - 3512	100	60 / 60	minus
Harvest21	ABC18079	581	1e-24	523 - 581	100	59 / 59	plus
Harvest35	U35_23158	583	3e-25	523 - 582	100	60 / 60	plus

Contig Sequence (583 bp)

>U35_23158 583 Hv_44K_v2
CAAGCCGGTCGGCCCCGGCCCGTGCGCCGCCAACAACGGCGGGTGCTGGAAGGAGACGAG
GCACGGCAAGACCTTCTCCGCCTGCAGGGGCTCCGAGTCGCTCAGCGGCTGCGAGTGCCC
GCCGGGCTTCAAGGGCGACGGCCTCACCTGCCAAGACGTGGACGAGTGCAGCGACAAGGT
GGCGTGCACCTGCCCGGCCTGCTCCTGCAGGAACACCTGGGGCGGCTACCACTGCGGCTG
CGGCGGCGGCGGCGGCAACCAGGTGTACGTCATGGCCGAGGACACCTGCGTGGGGAAGAG
CGCGGCGGCCACGGGGTGGCTGGTGACGGCGCTGGTGCTCTCGTGCCTCGTCGGCGCCGG
GCTCGCCGGCTTCGCCTTCTACAAGTACAGGCTCAGGCGGTACATGGACTCGGAAGTGGC
GGCGATCATGTCGCAGTACATGCCTCTGGAGGGCCAGAGCAGCACCGGCGGCGAGAACCG
GCCGCTCAGGGAGGAGGCCGTCGAGGCAGCATAGATGGCCAGACAGCTCTGGGGTTTCAA
GATGGATTTCCCACAAATGGTGAATAATACCATGGCGCGTATG

Homology of Contig U35_23158 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g52190.1	633	4e-73	protein\|vacuolar-sorting receptor precursor, putative, expressed
Brachypodium v1_2	Bradi5g21370.1	639	6e-76
Arabidopsis v10	AT1G30900.1	631	4e-53	\| Symbols: VSR6, VSR3;3, BP80-3;3 \| VACUOLAR SORTING RECEPTOR 6 \| chr1:10997275-11000543 FORWARD LENGTH=631