- Probe CUST_19054_PI390587928
- Source Contig U35_11181
Probe Details
Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
---|---|---|---|---|
CUST_19054_PI390587928 | Hv_44K_v2 | TGCTACAAGTTGTGGGATACATCAAAGTGGTGAATTAACTTGGCTCAATTGTGCAAAAAA | 169 | GeneList: grey60 MasterList: None |
Probe Values
3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
---|---|---|---|---|---|---|
Normalized | 10.132 | 7.318 | 1.346 | 0.729 | 0.232 | 0.482 |
Raw | 905.849 | 1097.218 | 167.664 | 154.993 | 16.010 | 37.076 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
---|---|---|---|---|---|---|---|---|
MLOC | MLOC_57890.1 | 1304 | 9e-22 | 1203 - 1257 | 100 | 55 / 55 | plus | ABC23582 |
JLOC1 | JLOC1_37592.2 | 1510 | 5e-22 | 1395 - 1449 | 100 | 55 / 55 | plus | |
JLOC1 | JLOC1_37592.1 | 1318 | 5e-22 | 1203 - 1257 | 100 | 55 / 55 | plus | |
Harvest21 | ABC23582 | 240 | 3e-25 | 170 - 229 | 100 | 60 / 60 | plus | ABC23582 |
Harvest35 | U35_11181 | 240 | 3e-25 | 170 - 229 | 100 | 60 / 60 | plus |
Contig Sequence (240 bp)
>U35_11181 240 Hv_44K_v2 ATCAGTTCTAGTCAACCTGCACGAGCTCTTGCTTGACTACACACACTGCAATAAAACTAG AAGGTCGTCGGCAGTGTTACCAGTACTCAACTATTCCTGTCAAACCAGCTGGCTATAATG AGTCAATTACACTGCTAGTGTCACAAGTTGGCATGAATGTTTACTTCGATGCTACAAGTT GTGGGATACATCAAAGTGGTGAATTAACTTGGCTCAATTGTGCAAAAAAAAAAAAAAAAA
Homology of Contig U35_11181 to Model Species (E-value threshold 1e-50)
Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
---|---|---|---|---|
Rice v7 | None | |||
Brachypodium v1_2 | None | |||
Arabidopsis v10 | None |