barSeed - Barley Seed Development Database

Probe CUST_19044_PI390587928

Source Contig U35_47118

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_19044_PI390587928	Hv_44K_v2	TTGGAACCTTTAACTTCAGTTTGTAGCCGTTGTTGTTTCTCTATAATGCCGCATTCATTT	20	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_53551.1	2216	7e-23	13 - 72	98	59 / 60	minus	None
Harvest35	U35_47118	731	3e-25	21 - 80	100	60 / 60	minus

Contig Sequence (731 bp)

>U35_47118 731 Hv_44K_v2
TTTTTTTTTTTTTTTTTGAAAAATGAATGCGGCATTATAGAGAAACAACAACGGCTACAA
ACTGAAGTTAAAGGTTCCAATATTTCTCACGTGACGCATACAAGGTACCCTTTGATCAAC
AGCCGGATAAAACTGCGTAGCAAGTCCATTCGGTTCAGCTATCCATAGTTGATCAAGCTA
CAGAACAAGCAAAGATTACATATATGCTACATCCATGGTCGCTGATTGTTTTTGTGGCCA
GGTTACACGAGGAACATCCCTACATACACGGCTACATGTAGCTAGGCTGAGTTGTTAAAA
CGGACAAGGATTAATCTGAGTCTGGCTGTTGCCTGCTTGGTCGCCGGAAGTAGTACACGA
AAATGTCGATGCCATGAAGCGATGCGTATTTCCTGAGCAGGCGTTCTATGGTATACCACT
CTGATCGCTGGGAGCCACTTCTCTGACCAATCCGGGGCATATGGATACTCGCAGAACGCT
GAGCAGCTGAGAAGGCCGCCTTTGACAAACACAGCTCCAAGTCAGACATTGAGATTTCAC
TTCTTGGAATCTTACGTTTCGGATTATAAGACTGCACAACAGCTAGTGCAACCCATAGAG
GTGCATCCAAACTCCGGCTACAGTTGGCTTCATCTAGCTCAATCAAATGAAGATCCCCAT
GTGAAGATCGTCGACTTCAGAAGCACGATGATNAGCATCTGGAATGTATGTTGAGAGANC
TAGTCAAGCAT

Homology of Contig U35_47118 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g01200.1	843	3e-52	protein\|SNF2 family N-terminal domain containing protein, expressed
Brachypodium v1_2	Bradi1g78440.1	887	9e-60
Arabidopsis v10	None