- Probe CUST_19043_PI390587928
- Source Contig U35_47119
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_19043_PI390587928 | Hv_44K_v2 | AAAGAGTACTCTGGAATGCTTCACAAAGCCCTGGAAGGCGCAGTAATGCTACATACTTTT | 429 | GeneList: tan MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.761 | 0.785 | 1.652 | 1.912 | 0.715 | 1.134 |
| Raw | 87.237 | 144.280 | 259.798 | 495.598 | 62.716 | 108.003 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK369115 | 1256 | 2e-24 | 437 - 496 | 100 | 60 / 60 | plus | ABC16912 ABC49970 |
| MLOC | MLOC_74157.2 | 838 | 2e-24 | 580 - 639 | 100 | 60 / 60 | minus | ABC16912 ABC49970 |
| MLOC | MLOC_74157.3 | 1347 | 2e-24 | 1029 - 1088 | 100 | 60 / 60 | minus | ABC16912 ABC49970 |
| MLOC | MLOC_74157.1 | 1011 | 2e-24 | 717 - 776 | 100 | 60 / 60 | minus | ABC16912 ABC49970 |
| JLOC1 | JLOC1_49404.1 | 1086 | 8e-25 | 260 - 319 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC16912 | 1591 | 3e-25 | 420 - 479 | 100 | 60 / 60 | plus | ABC16912 |
| Harvest35 | U35_47119 | 630 | 3e-25 | 430 - 489 | 100 | 60 / 60 | plus |
Contig Sequence (630 bp)
>U35_47119 630 Hv_44K_v2 GCACAGACAAGCCCTAGGGTTTTAGCACTGCTCGAGCGGGCGGCCGGCGACGCAGAGGCG CAGACACACTTTCCGGCCATGTCGGCGGCGGCAGCAGCTGCGGACACGTACTCCCCAGCC GCGGAGGCTGGGAGCAAGCGGCGGGAGAGGCGGGAGGAGCTGCGGCGCCACCTCGCCGAG GACGCCGATTGGCCCCGCGCCGACGGCCGCTCCTTGCACGACTGCCGCCCCGCATTTATG CAAACAGGGCCAACTACTGCTGCGTCAGGGTCTGCTTATGCAGAATTTGGGAAGACAAAG GTCATTGTGTCAGTGTTTGGCCCAAGGGAGAGCAAGAAAGCAATGCTGTACAGTGACACT GGTAGGCTCAATTGCAGTGTGAGCTATACAACATTTGCCACTGGTATACGTGGACAGGGG TTGGAAAACAAAGAGTACTCTGGAATGCTTCACAAAGCCCTGGAAGGCGCAGTAATGCTA CATACTTTTCCGAAGACTACTGTTGATGTTTTTGCGTTGGTTCTTGAGTCTGGTGGCAGC GATCTTCCCATTATAATATCTTGCGCTAGTCTTGCACTGGCAGATGCTGGGATCATGATG TATGACCTTGTTACATCAGTATCTGTGTCC
Homology of Contig U35_47119 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os03g62720.1 | 261 | 7e-101 | protein|exosome complex exonuclease, putative, expressed |
| Brachypodium v1_2 | Bradi1g20450.1 | 263 | 2e-101 | |
| Arabidopsis v10 | AT4G27490.1 | 256 | 5e-79 | 3-5-exoribonuclease family protein | chr4:13739961-13741647 FORWARD LENGTH=256 |