barSeed - Barley Seed Development Database

Probe CUST_19040_PI390587928

Source Contig U35_23162

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_19040_PI390587928	Hv_44K_v2	TGTTAAGGTGGGTTAGCCCAAGTAGATGACGACGATGAATGCATTGAGCTAACTAAAAAA	591	GeneList: lightsteelblue1 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	13.326	2.835	1.032	0.774	0.352	0.353
Raw	373.902	125.102	40.499	46.843	6.461	7.450

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_58140.1	2707	3e-22	2601 - 2656	100	56 / 56	plus	ABC17614
JLOC1	JLOC1_37745.1	2694	1e-22	2459 - 2514	100	56 / 56	plus
Harvest21	ABC17614	656	3e-25	592 - 651	100	60 / 60	plus	ABC17614
Harvest35	U35_23162	656	3e-25	592 - 651	100	60 / 60	plus

Contig Sequence (656 bp)

>U35_23162 656 Hv_44K_v2
CTTGGTGTACCGCAACCAGATCCTGAACGTGTACTACCCCAAGTACGAGATGGGAGGGAA
GCTGTGGCCGATCATGCACAACACCATGGTGTTCTCCCTGGTGCTCACGCAGATCATCGC
GCTGGGCGTGTTCACCATAAAAAAGGCGCCGGTGGCCACCGGGTTCACCATCCTGCTCCT
CATCGGCACCATCCTCTTCAACGAGTACTGCCGGCAGCGCTTCGCCCGCATCTTCAACTC
CTACTCCGCTCAGGATTTCATTGAGCTGGACAGAGACGACGAGCAGTCGGGGAGGATGCG
GGAGATCCACGAGCACCTGCTGGACGCCTACTGCCAGTCGCCACCGGGCAGCGCCGACGA
CGTCCCGATCGAGATGATCCTGGAGGACCCGGCGCAGGAGGCGTCCAATTCGAGCCAGGA
GCTCTGCGACACGGTGCAGGAGGTGGCGGAGTCCATCATCCAGGAGCACATCGAGGAGCG
GCACGACAGTGTCACCGGCCGTTGCTGATGTTGTGCTGATTTGGCTCTCTTTCTCTGTGC
CTTGGCTACCGATCTGTGGTTTACGGTCGATGAATCGACTTTAATTATACGTGTTAAGGT
GGGTTAGCCCAAGTAGATGACGACGATGAATGCATTGAGCTAACTAAAAAAAAAAA

Homology of Contig U35_23162 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g51620.1	744	5e-61	protein\|DUF221 domain containing protein, expressed
Brachypodium v1_2	Bradi1g10130.1	741	3e-75
Arabidopsis v10	None