barSeed - Barley Seed Development Database

Probe CUST_19038_PI390587928

Source Contig U35_23164

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_19038_PI390587928	Hv_44K_v2	ACTTGGTTGAAGAATGATGGATTCATATACGACCTACATAACTTTAGCAAACGTGAGAGT	420	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.167	1.335	1.275	1.032	0.511	0.439
Raw	28.422	49.387	42.121	50.866	9.067	8.878

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_22069.6	936	2e-24	381 - 440	100	60 / 60	plus	ABC21186
MLOC	MLOC_22069.4	1483	2e-24	277 - 336	100	60 / 60	plus	ABC21186
MLOC	MLOC_22069.2	1603	2e-24	785 - 844	100	60 / 60	plus	ABC21186
MLOC	MLOC_22069.5	1638	2e-24	387 - 446	100	60 / 60	plus	ABC21186
MLOC	MLOC_22069.1	1319	2e-24	521 - 580	100	60 / 60	plus	ABC21186
JLOC1	JLOC1_15296.2	1327	8e-25	411 - 470	100	60 / 60	plus
JLOC1	JLOC1_15296.1	1331	8e-25	411 - 470	100	60 / 60	plus
Harvest21	ABC20850	789	3e-25	416 - 475	100	60 / 60	plus
Harvest35	U35_23164	794	3e-25	421 - 480	100	60 / 60	plus

Contig Sequence (794 bp)

>U35_23164 794 Hv_44K_v2
CTCAATGGCGCCTATCCCCCTGTCCGTACCCGCCCCCAGCGCCTCCCCCACGTCGTGGCG
CCTCCGCCGCCGGCCCATCGCGGCCGCGTCGCGCTCGCGGCGCTCCTCCTCCTGGCCGCG
GCCGTCGCCGTCTGGCGCCCGGACTACCTCCCCGCCGCGCTCCTCCGACGCCCTCCGCCC
GCCGTCGCCAGGTTCTACTCCTTCGACCTGGTCCGCGAGTATCCCCACGACCCCGAGGCC
TTCACCCAGGGTCTCCTGTACGGAGGAAACGGCACCCTCTTCGAGTCCACTGGCCTTTAT
CATCAGTCGTCGGTCCGAAAGGTTGATCTTCAAACTGGCAAAGTTTTAGATCAGCACCAA
ATGGATGGACATATGTTTGGAGAAGGCTTAACACTTCTCGGCGACAGATTGTTTCAAGTT
ACTTGGTTGAAGAATGATGGATTCATATACGACCTACATAACTTTAGCAAACGTGAGAGT
TTTACCCATAAAATGCGTGATGGGTGGGGGTTGGCTACAGATGGAAAAATCCTATTTGGC
AGTGATGGTACCTCAAGGTTGTACCAGCTGGATCCAGTATCACTTGAAGTGACGAAGACA
GTAACTGTAAAATATCAAGACAATGAAGTTTCCTATATTAATGAACTGGAGTATATAAAT
GGTGAAGTATGGGCAAATGTCTGGCAGACAGATTGCATAGCTAGAGTTTCTCATGAAGAT
GGCCAAGTGGCGAGCTGGATCTTTCTTCATGAGCTGAGGCAGCAACTGTGGAAATCTGGC
AACACGGATATTGA

Homology of Contig U35_23164 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g01410.1	343	1e-125	protein\|glutamine cyclotransferase precursor, putative, expressed
Brachypodium v1_2	Bradi1g52340.1	323	4e-129
Arabidopsis v10	AT4G25720.1	320	7e-88	\| Symbols: ATQC, QC, QCT \| glutaminyl cyclase \| chr4:13099929-13102470 REVERSE LENGTH=320