barSeed - Barley Seed Development Database

Probe CUST_19036_PI390587928

Source Contig U35_23166

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_19036_PI390587928	Hv_44K_v2	ATTTCTTCCTATCCGAGGATGATATTGGGAAGAAACAGGCTGCTGCTTGTGTTGAAAAGC	571	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK363409	3542	3e-21	457 - 516	97	59 / 61	plus	ABC08053 ABC10412
MLOC	MLOC_34537.1	3924	3e-21	3268 - 3327	97	59 / 61	minus	ABC08053 ABC10412
JLOC1	JLOC1_22281.1	3936	2e-21	600 - 659	97	59 / 61	plus
Harvest35	U35_23166	631	3e-25	572 - 631	100	60 / 60	plus

Contig Sequence (631 bp)

>U35_23166 631 Hv_44K_v2
CCTATCCACCGCGCCGCATCGGCGACTCAATCCAACACCACCACCACCTTGCCTTGCCGC
AAAACCCCACCGCGCCCGCCCCTTTCTATATATACGCCATTCCACCGGCTTCGCCCCCAA
GCCGAAGGTAGCCTCACAAGCGACACGCCGTCCTCAAGGCCGCGGGCGCCGCGCGAACCC
TAGCCGCCACTCCGATCGCCCGCACCGGGGGCCGCGCTATATGCTTCCGACGAAGAGAGC
GGACGGCGCTGAGGACAGCGGCGACGCGGCGGCGAAGAAGGCTCGGGTAGGGGAATCGGC
GGCTGAGGCGGGGTCGGAGGCCATGGTTGCCGGGGAGACGGTTGGCGGGGGAAGTAACGG
GAACGGGGTGGCGGAGATCGATGAGGACCTTCACAGCAGGCAGCTCGCCGTGTACGGGAG
GGAGACGATGCGGCTGCTCTTTGCGTCCAACGTGCTCGTCTCCGGCTTAAACGGGCTTGG
GGCTGAGACAGCAAAGAATCTTGCTCTGGCGGGTGTTAAATCTGTCACCCTACATGATGT
AGAAAATGTGGATATGTGGGACCTCTCTGGCATTTCTTCCTATCCGAGGATGATATTGGG
AAGAAACAGGCTGCTGCTTGTGTTGAAAAGC

Homology of Contig U35_23166 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None