barSeed - Barley Seed Development Database

Probe CUST_19010_PI390587928

Source Contig U35_47129

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_19010_PI390587928	Hv_44K_v2	CAACGACAACGACAGCGGGGGCTCCTTCCCGATGGACTTCTCCGCGCAGGGCGACCGCGA	262	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_77955.1	1218	2e-24	59 - 118	100	60 / 60	plus	ABC18913
MLOC	MLOC_77955.2	950	2e-24	58 - 117	100	60 / 60	plus	ABC18913 ABC21171
MLOC	MLOC_77955.3	1094	2e-24	58 - 117	100	60 / 60	plus	ABC18913
JLOC1	JLOC1_51961.1	1004	8e-25	58 - 117	100	60 / 60	plus
Harvest21	ABC47939	343	3e-25	263 - 322	100	60 / 60	plus
Harvest35	U35_47129	343	3e-25	263 - 322	100	60 / 60	plus

Contig Sequence (343 bp)

>U35_47129 343 Hv_44K_v2
GGCACGGAGGGGCCTCGCGCTGCGGTGCGGCTCCTCGCCGGAGCCGACGATGCGGCTCGC
GCTCCTGCCCCTCGTGCCCACCCTCGGCTTCCCGTGGCCGTCCGACACCAGGCATTTGGA
GGCGTCGTCGCGGGGGTTCGACGTGAACCACTGCGCCGTCGTCCGGGGGCTCGGCGTGGG
GCGCGTGCGCGGCGGCGGCGGCGGAGGAGGAGGAGCAGGAGGACACCGCGGCGGCGGCGC
GCGCGGCCGTCTCGTCCTCGCCCAACGACAACGACAGCGGGGGCTCCTTCCCGATGGACT
TCTCCGCGCAGGGCGACCGCGACGCGGCCCCGGCCGGCGGCGG

Homology of Contig U35_47129 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None