barSeed - Barley Seed Development Database

Probe CUST_18994_PI390587928

Source Contig U35_35155

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_18994_PI390587928	Hv_44K_v2	CAAAAATACCTGATGTGATATTTCCTCGAGCAATGTAATCATCGGTTATGTGAACTGGCA	333	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK375029	1311	7e-23	1195 - 1254	98	59 / 60	plus	ABC16937
MLOC	MLOC_36701.1	613	7e-23	138 - 197	98	59 / 60	minus	ABC16937
MLOC	MLOC_36701.2	630	7e-23	138 - 197	98	59 / 60	minus	ABC16937
JLOC1	JLOC1_23672.1	678	4e-23	452 - 511	98	59 / 60	plus
Harvest21	ABC16937	937	5e-23	803 - 861	98	58 / 59	plus	ABC16937
Harvest35	U35_35155	394	3e-25	334 - 393	100	60 / 60	plus
Harvest35	U35_8930	937	5e-23	803 - 861	98	58 / 59	plus

Contig Sequence (394 bp)

>U35_35155 394 Hv_44K_v2
CTCCTATAGGGCGAATTGGGCCCTCTTCAAGAAGCTCGAGCGGCCGCTGGCAGTCATCTG
GATGGGAACTCTCGGTTGGCAGTTATACACAACGCTGGGCACGCAGTCAATCTCCAGAAG
CCTACAGAGGTGTGCAAGAGCATCATCGAGTTCTTCCAAGAGCCGGTCCCCGAAGCTTCA
AACGACGAAAGGGTGTAGTAGGTGTGACTCTCATCGAAGATCGAAGCTGCGGATGGTGTC
TTCTTCGCTGGGCATCGGCATTGTGGTCAAAACTGACACTGGAAGAGGAGAGGGAGAGGG
GGGTCATCGTAACGTTCTCGCCGTTCTTCGCGGCAAAAATACCTGATGTGATATTTCCTC
GAGCAATGTAATCATCGGTTATGTGAACTGGCAT

Homology of Contig U35_35155 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None