- Probe CUST_18989_PI390587928
- Source Contig U35_47133
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_18989_PI390587928 | Hv_44K_v2 | TGATAACTCCATGGTTCTTGAAAGCAGGATCAAGCTTGAAACACGGCTTCGGGTTCTTGA | 533 | GeneList: turquoise MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.360 | 1.392 | 1.412 | 0.818 | 0.275 | 0.346 |
| Raw | 4728.673 | 7570.050 | 6633.027 | 6255.333 | 707.119 | 987.777 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_44617.1 | 2029 | 7e-23 | 1243 - 1302 | 98 | 59 / 60 | plus | ABC03819 ABC03821 |
| MLOC | MLOC_44617.2 | 1944 | 7e-23 | 1261 - 1320 | 98 | 59 / 60 | plus | ABC03819 ABC03821 |
| JLOC1 | JLOC1_28927.4 | 2154 | 4e-23 | 1142 - 1201 | 98 | 59 / 60 | plus | |
| JLOC1 | JLOC1_28927.3 | 2159 | 4e-23 | 1147 - 1206 | 98 | 59 / 60 | plus | |
| JLOC1 | JLOC1_28927.2 | 2173 | 4e-23 | 1161 - 1220 | 98 | 59 / 60 | plus | |
| JLOC1 | JLOC1_28927.1 | 2196 | 4e-23 | 1184 - 1243 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC03820 | 822 | 1e-23 | 21 - 80 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC03819 | 2186 | 1e-23 | 1237 - 1296 | 98 | 59 / 60 | plus | ABC03819 |
| Harvest35 | U35_47133 | 652 | 3e-25 | 534 - 593 | 100 | 60 / 60 | minus | |
| Harvest35 | U35_14397 | 2191 | 1e-23 | 1242 - 1301 | 98 | 59 / 60 | plus |
Contig Sequence (652 bp)
>U35_47133 652 Hv_44K_v2 TTTTTTTTTTTTTTTTTGGGGCCTCTTAAAGTGACTGCTCACCACTTGCAAGTTTTGAAT TGTAGGGTTCGTCGCTGCTAGTCCTAATGTGGCATTCCATTCTACACGAATGGCAAGTCC CAAAACTTTCAGACGATCATAGTACAGCAATACACCACAAATTCCCGCCATATCTCCGTG CTGCTCACTCGTCAGCATGCTTCTTCTTTTTCTTCTTCTTGGCAGACACGTCAGTCTCCA TGGGGGTGTCCTCGGCGTCTGATTTCTTCTTCTTTTTCTTCTTCTCTTTCTCCTGCTCAC CATCCTTTTCAGCTGCCTCCACGGTAGGTTCTTCCTCTTGGTGCTTCCTCTTCTTTGAAG CCACCTCCTTCTTTGGTGTTTCTTCAGTTGTTTGCCCGACCACTAGATCTGCTGCTGGGT TGTAAGTTTTAGCGGGAGTGATCAAAGCACCACCACCCTTCCGGTCCTTTTCATACGCTT CAATCTTGGGCTTTCCTTTTGTGGAACCAGCAGACCTCCCAAGATCTTTACCCTCAAGAA CCCGAAGCCGTGTTTCAAGCTTGATCCTGCTTTCAAGAACCATGGAGTTATCATCACCGT CAGCAAGGGCATCATATCTTATNGGCAGTGCAGACTTAGCAGCAAGTGAACG
Homology of Contig U35_47133 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os03g22740.1 | 569 | 2e-52 | protein|nucleolar protein NOP5-1, putative, expressed |
| Brachypodium v1_2 | Bradi1g18440.1 | 561 | 2e-56 | |
| Arabidopsis v10 | None |