barSeed - Barley Seed Development Database

Probe CUST_18983_PI390587928

Source Contig U35_23181

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_18983_PI390587928	Hv_44K_v2	TACTCCCCCCGCCCTATAATACTCTTAAGACCTCTTTTGGCACTATGGCAGTGTAAAAAA	903	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.630	1.674	1.132	0.802	0.384	0.335
Raw	508.388	804.957	487.038	556.694	91.142	85.910

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_53917.1	3322	7e-23	170 - 229	98	59 / 60	minus	None
JLOC1	JLOC1_34669.2	3319	4e-23	3143 - 3202	98	59 / 60	plus
JLOC1	JLOC1_34669.1	2986	4e-23	2810 - 2869	98	59 / 60	plus
Harvest35	U35_23181	974	3e-25	904 - 963	100	60 / 60	plus

Contig Sequence (974 bp)

>U35_23181 974 Hv_44K_v2
GGAAGAAGTCTATATGATGAGCCACGTGTGAAGTGCAACGTTGTGAAGGCTGAAATATAC
GACCCAGCGAAAGAGAGTCGTTTTCTTCTGGGGGCGATTGATAGCCTTTTGGTGGAGGAT
GCCTCAGGCTCGTCCCCTGGGCTGAATGGTGGTCCTGCTGTTAATACTGGTTTCATTAAC
TCAGAAGCTGATCAGAGTGTGCCAGCTTCCAACAATTCCTATGCCATGAATATGGGTGGC
CTAAATCAGTTTGGGCAGCAATTCAGCGCATCTCATGGGATGCCATCTGCACTTTCAGCA
ACACCAGCAGCAGGTAGTGGTGGCTTCGCGGCTAATTCCTATGGTCCTCCAGCTGCATCT
CGTGGGATGCCGACTGCACCATCAGTGACACCAGCAGCAGGTAGTGGTGGCTTCGTGGCT
AATTCCTATGGTCCTCCAGCTGCATCTCGTGGGATGCCGACTGCACCATCAGCGACACCA
GCAGCAGGTAGTGGTGGCTTCGCGGCTAATTCCTATGGTCCTCCAGCTGCCAATGCCAGC
TCAGGCTTGTGCTTCAAATGTAACCAGCCTGGGCACTTTTCTAGAGACTGTCCAGGACAG
GCTGCCCCCTACGGTTCTTCAGTTGGCGGCAACGCCAACACTGGTCTGTGCTACAAATGT
AATCAGCCTGGTCACTTTGCGAGAGACTGTCCGGCGCAGGGTGTTGGCCAGGAGCGCCAG
ATGTATGTGAATGGCGCCGCATCAGGAGGATACAACAGGCAATCCTATGTTGGTAGCTAA
GTAGTTTGGCCGATCACTTGTTTTCCGTTGTCTATTTTAGTACTGCTTGTAGTATTTTCA
TGTATTTGCACTACTTGATCTTGATTGTCAATAGCTGTTGACTGGATAAGGAAACTAGTT
TGCTACTCCCCCCGCCCTATAATACTCTTAAGACCTCTTTTGGCACTATGGCAGTGTAAA
AAAAAAAAAAAAAA

Homology of Contig U35_23181 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi2g38877.1	946	3e-65
Arabidopsis v10	None