- Probe CUST_18979_PI390587928
- Source Contig U35_23185
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_18979_PI390587928 | Hv_44K_v2 | CTGTAAATATGGAGTGCTGGGAGAGGATGACTGCTTGTTAAAAACATGGTGTTGCTCAAA | 477 | GeneList: darkslateblue MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.834 | 2.621 | 1.195 | 0.860 | 0.251 | 0.310 |
| Raw | 220.053 | 503.921 | 196.181 | 226.887 | 22.571 | 30.741 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_69702.2 | 2378 | 6e-24 | 2319 - 2377 | 100 | 59 / 59 | plus | ABC30458 |
| MLOC | MLOC_69702.1 | 2183 | 6e-24 | 1926 - 1984 | 100 | 59 / 59 | plus | ABC30458 |
| MLOC | MLOC_69702.4 | 850 | 7e-23 | 794 - 850 | 100 | 57 / 57 | plus | ABC30458 |
| JLOC1 | JLOC1_46207.1 | 1745 | 3e-24 | 1544 - 1602 | 100 | 59 / 59 | plus | |
| Harvest35 | U35_23185 | 551 | 3e-25 | 478 - 537 | 100 | 60 / 60 | plus |
Contig Sequence (551 bp)
>U35_23185 551 Hv_44K_v2 GGCGCCGTTCGGCAACCTCATCATCGATTACTAGGCGCGCACCACCCGCCATTGACAAGC TACGACCCGCACGCCCAGTTGCAGAGTGAATGGAGTGAGAAAGCGGCCACCACTTCGGTG CCCGCCATTGCCTTTGGTTGTGCTTCTCGATGTGGATTCCACCAGTAGCTTTTCAGGGAG AAAGCAGGCAGGTGGACGGACGGAAACACAACTGAAAAAGCGCCAGCCTTTTCTTCTTCT TACTGCTTAAAATCATCTTCATCATCTAGGACAGACACCAAAAATTACCACCACACTACA GAGAGATTAATTACTGTATATGATTATGGCCCTGCTCTGCTACTACTGTCTCTACACTAG ACTTCAGTTTTGTGGTTCATGTTTCTAGGTAATTACCCTAGCTAGAGTAATAAGCAACTG CCACTTGTTGGTCAGGTTTTGTGATGTCTGGCTCTTGTTAGTTTGTGCTTTCTTTATCTG TAAATATGGAGTGCTGGGAGAGGATGACTGCTTGTTAAAAACATGGTGTTGCTCAAAAAA AAAAAAAAAAA
Homology of Contig U35_23185 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |