barSeed - Barley Seed Development Database

Probe CUST_18976_PI390587928

Source Contig U35_23188

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_18976_PI390587928	Hv_44K_v2	AGGAGTACACAAGTTTGGTCAGGTTCACTTGGTTCAGACCGTTTGTCGAACTTTATGTGC	1355	GeneList: grey60 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.447	2.359	0.855	0.578	0.921	0.949
Raw	18.026	26.139	8.800	7.563	3.034	4.626

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC18432	1523	3e-25	1356 - 1415	100	60 / 60	plus	ABC18432
Harvest35	U35_23188	1523	3e-25	1356 - 1415	100	60 / 60	plus

Contig Sequence (1523 bp)

>U35_23188 1523 Hv_44K_v2
CCCTACCCCATCTTCCTCGCCATCTCCTCCCCGCCCCCGGCCTCCTCCGCCGCGTCCCCG
CCCAGATCGTTCGACTTCCTCGTCAAGCGCCTCCCCGGCACCCCCTCCGCGCGCCTCTGC
GACCTCCGCCCCGGCGACCTCGTCCCCGTTGGGGGCAGCGTCGTCGGCCAAGGGTTCGAG
GTCCGCAGGATCGCCCACGCCCGCCACGTCCTCGTCTTCGCCACCGGATCCGGGATCAGT
CCAATCCGGTCACTCATTGAGTCAGGTTTTGGCGAAAGTGAGAAGATTGATGTAAGCCTC
TTTTACGGGGTTAGAAACCTTCAAAGGATGGCTTATCAGGAAAGGTTCAAGGACTGGGAA
TCGAGAGGAATACAAATTATACCTGTTCTCTCTAGACCAGATGATCAATGGACTGGTCAG
CGAGGCTATGTTCAAAATGCCTTTTCAAGGGAAAAGAAGGTTATAAATCCATCATCGACG
GGAGCGATTTTGTGTGGACATAAACAGATGACTGAGGAAATTACTAGAGCTCTTGTTGCT
GATGGTATGTCCAAAGATAAAATCTTAACAAACTTTTGAGTTCCACTGGAGCACGTTTCT
TGCCCTTTTGGCTGTTGTACACTTACCCCCCCAATTTGGTGGCTGTTCTTTACAGCAAAT
GCGATGCGACTTAGATCGTGAAAAAGATACTGGTACGTACTAACAAATAAGGGCAACACA
TTTTCCTTCGCGCCGCGAGTTGCCTATCAACCATTGGATGTTGATATCCTGATATATTAA
TCTCAAGCAAGAAGAAAATGATTGGTGGTACCCTCAGACAGTATTCCCCTGGAAGGTGCT
GATGCACTCGAAAAGCCCCCTTCCAGAATAGTAAAAGGGGGCGCAAAAGGGGACATAGGT
TGTAAGTTGGTAAAATCATCTTTTAGTTTGTATGCCTTTGGATATAATCGGCTGCAAGTG
TTTCTGCCGCGAAATTTTGGTATGCTTGAAGGTTGTAATATTTTTTGAATTGCCTGGATG
CATGTGGAGCCTGTTCTCCCAACTGACTGTGTGTAACTGCTTTCTCGACTGACAACAAAA
AAAAATACATGAAAGAGGGGTTTGTTCTTAGACCCAACTGAAGTTATCCGTCTGCTATAT
CTTGGATGTGATCAAAGATAGTTGTGCAGTTGTGTTCCTGTCATGTTTGTTTATGTTGAT
ACTATGTTGAGCAGCCAAGGCCCAACATATGCACCCTTTCAAGGCTTTTGTGCAGACCAA
CTCTACACATTCTGCTGAGTGGAATTTAGATCAAATAGTCCTGCAGCATTCCAGGTGGTC
TAAACTCCCCTTGAAGGTCAGGGCAATTGCATTGCAGGAGTACACAAGTTTGGTCAGGTT
CACTTGGTTCAGACCGTTTGTCGAACTTTATGTGCGGTTTTTGGTGTGTGTTTATGTGTT
GGTTTTCTATACTATGTGTTTCTTAACCAGNTNTATTCTTTCTTTNTTAATTNTTTAAAA
ATACATGTCTAATTTTTTATTCT

Homology of Contig U35_23188 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g03050.1	272	8e-100	protein\|fruit protein PKIWI502, putative, expressed
Brachypodium v1_2	Bradi2g01530.1	275	2e-102
Arabidopsis v10	AT1G15140.1	295	7e-60	FAD/NAD(P)-binding oxidoreductase \| chr1:5210403-5212137 REVERSE LENGTH=295