barSeed - Barley Seed Development Database

Probe CUST_1896_PI390587928

Source Contig U35_2770

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_1896_PI390587928	Hv_44K_v2	CTCGTTTGGTCTGTATCCTGTAATTTATGTGATATACTAGTGCTTCTCGAATTCATTCAA	1164	GeneList: paleturquoise MasterList: Structural_proteins_Function_Probe_Module

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	14.956	6.470	1.399	0.561	0.209	0.186
Raw	479.076	362.826	63.169	42.756	3.535	3.397

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_76349.2	1260	6e-24	953 - 1011	100	59 / 59	plus	ABC06782
MLOC	AK375449	1219	2e-23	1162 - 1219	100	58 / 58	plus	ABC06782
JLOC1	JLOC1_50917.1	931	3e-24	793 - 851	100	59 / 59	plus
Harvest21	ABC06782	1269	2e-22	1165 - 1219	100	55 / 55	plus	ABC06782
Harvest35	U35_2770	1269	3e-25	1165 - 1224	100	60 / 60	plus

Contig Sequence (1269 bp)

>U35_2770 1269 Hv_44K_v2
GCTCAGATCAGCCCCCATCCCAGCCCACCAACCCCGTTGCCCGCCGGTACACCACCACGG
CAATGGCGTCGGCGTCGCGGATCCTGCTCGTGGCCGCGCTGCTCTTCGCGGCGTCGGCAA
TGACGTCGGCGCAGAAGGCGAAGGCGCCCGCGAAACCCGCCCCCGCGGCCGCCGACGCGC
CCGCGGCCGTCGAGGCGCCCGCGAAGCCCGCCCCCGCCGCCGCCGACGCTCCCGGCGCGG
CCGCCGCCGACGGGAAGCCGCCGACGGACGTGACGGCGGTGCTGGAGAAGTCCGGCAAGT
ACTCCAAGTTCTTGGCGCTGCTCAAGGAGACCCGCGTGGAGACGCAGATCAACGCGCAGC
TGACGGACAGCTACAACGGGCTGACCATCTTCGCCCCCACCGACGCCGCCTTCGACGGGC
TCAAGGCCGGCACCTTCAACACGCTGACGTCGCAGGAGCAGATCCAGATGGTGCTCTACT
GCGTGCTGCCGCGCTTCTACTCGCTCTCCATGCTCGGCACCCTCAACGGCAAGGTGAGCA
CGCAGGCGTCCGGCCACTCCGGCCCCTACACCTACAAGATCAAGCCCTCCGCCAACAACG
TCAACGTCTCCACCGGCGTCAAGGGCAACAACATGCTCCTCGGCAGCGTCGTCAGCAAGG
ACTTCCCGCTCGCCGTCTACTCCATCGAAAAGGTGCCGCTCCCCTACGAGCTCTTCGGCC
CGCAGCCGCCCACCCCGGCGCCGGCCCCTGCCCCCGCGCCAACCAAGTCCAAGCCCAAGA
AGAAGAAGAAGTCCGCCGGGATCGCCGAGGCGCCCGAGGCCGACGACGCCACCGCCGACG
ACGACACCGAGAAGTCCGCCGCCGCGTCCCTCACCAGCGTCGCCAGGTGGACAGCCGTCC
TCGGTGCCGCCGTCCTCGGCGCCATGTTCTGATCCGATCCGAGATCCGAGAGGAACAAAC
AACACAAGGTGGTGGTGGTGCCATCTTTCTTGCACCGTGCGTGGTCGAGTTGCATTGACG
GGTGGATCCATTAGTCGATCCCTGTACCGATACTGTGATGATGTGTATGTCCATCGGCTT
CATTCTTTCTTCTTCTTCCTTTTCCCTTTCTTCCTTGTTTTCTTCTTGTTGATGATGAAC
ACTCGATTCTTGTCCTCTGGTTTTCTCGTTTGGTCTGTATCCTGTAATTTATGTGATATA
CTAGTGCTTCTCGAATTCATTCAAAAAAAAAAAAAACGCATTTCTCGTACGTAAAAAAAA
AAAAAAAAA

Homology of Contig U35_2770 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g48900.1	273	2e-71	protein\|fasciclin domain containing protein, expressed
Brachypodium v1_2	Bradi2g16560.1	273	3e-79
Arabidopsis v10	None