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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_18968_PI390587928Hv_44K_v2ATGCAGTGTATTTAACTCATTAGCTCTAACCACAAAAAAGAGAAAGATCCATGAGCGTCA16GeneList: white
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 1.0931.3871.4651.1030.4120.444
Raw 143.103286.948261.467311.39540.32047.082



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCMLOC_12955.335927e-231484 - 15439859 / 60plus None
MLOCMLOC_12955.135467e-231662 - 17219859 / 60plus None
MLOCMLOC_12955.232947e-231096 - 11559859 / 60plus None
MLOCMLOC_12955.531387e-231350 - 14099859 / 60plus None
MLOCMLOC_12955.435807e-231360 - 14199859 / 60plus None
JLOC1JLOC1_8735.331864e-23968 - 10279859 / 60plus
JLOC1JLOC1_8735.230854e-23867 - 9269859 / 60plus
JLOC1JLOC1_8735.133464e-231128 - 11879859 / 60plus
Harvest35U35_471456283e-2517 - 7610060 / 60minus



Contig Sequence (628 bp)

>U35_47145 628 Hv_44K_v2
TTTTTTTTTTTTTTTTTGACGCTCATGGATCTTTCTCTTTTTTGTGGTTAGAGCTAATGA
GTTAAATACACTGCATGGCGAAACAGCTAGAAAACTGTGTGAAGAACACTGGAGGTAAAT
ACATAACAGGAACAACATCCCAAACCAAGAAATCAACACTGTTTTCCTCAGATCCACTCA
ACAAGGCGCTTACTGACAAGCCCATCGCAATCTGCTAAAAACGCACACAAGATGGAAACA
AAAAACTTCCAACAGAAAAATTGTCGATGCCCCAAGGAGCTTTCAGTCGCTCTAAACGAT
TGCGGAGAAGAGGATCTGATCGGTGTCTTCATTCTCCCCATCCGCATCACCTGCCATTGG
CTTCAGCTGATCGGTCCACTCGTCGATCACCTTCTTGAGGCTAGTGTAGGTGGCCTCCTC
CTCGTCGGTCATAAGGGGCAGCCCGGATGAGGCAAGCAGCCGTTGTGTGGCGCTCCGCTG
CGCAGCCAGACTCGTGCGCATCATGTCGATCAGCTTCTGCTTCTGGGCGAGGAGGTCGCG
GCACAGATCCTTGAGCGCAGCCACCTCCTCCTGCACCCGCTTCAATCGCCCTACCAGTTT
TGCTGGGTTTGCATGGTCAGGGTATGAG



Homology of Contig U35_47145 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7None
Brachypodium v1_2Bradi3g53900.11541e-51
Arabidopsis v10None