barSeed - Barley Seed Development Database

Probe CUST_18967_PI390587928

Source Contig U35_47147

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_18967_PI390587928	Hv_44K_v2	AAACTGTATGGAAACAAATTGGGACCTTTTCTTGAGCACGCTGAGCATCTTACGGAGGAC	606	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK368262	4898	2e-24	2537 - 2596	100	60 / 60	plus	ABC11348 ABC32895
Harvest21	ABC47975	667	3e-25	607 - 666	100	60 / 60	plus
Harvest35	U35_47147	667	3e-25	607 - 666	100	60 / 60	plus

Contig Sequence (667 bp)

>U35_47147 667 Hv_44K_v2
TGCAGGATAGGAANTCCAGAGACCAATTATGATACGTGCTATGCATGGGTATTATTCCGA
CAGTTTGTTTTTACAGGTGAGCAAGGACTCCTGAAAGTTGTGATTGAGCATTTGAGGAAG
ATACCCTTGAAGGAACAGCGTGGTCCACAAGAACGCTTGCACTTGAAAAGTCTACGTAGT
TCTGTTGATGCCGATGATAGCTGCCAGGACTTTACGTTTTTTCAGTCTTTCCTGTCTCCA
GTTCAGAAATGGGTGGACAAGAAATTGAATGATTATCATCTGCACTTCTCAGAGGGTTCC
AGTATGATGGTTGATATCGTAACAGTAGCAATGCTTACTAGGCGAATCCTTGGTGAAGAA
AATGACAAGGCAATGGAGTCACCTGATCGAGACCAGATTGACCGTTACATCACTTCTTCT
GTCAAAAGTGCTTTCATGAAGATTGCACATTCCATAGAGATTAAAGCAGACACATCACAT
GAGCATGTTTTAGCATCTCTAGCCGAGGAGACAAAGAAGCTTTTGAAGATAGAGGCAAAC
ATTTTTTCCCCAGTTTTATCAAGATGGCATCCACAGGCAGCAGTTCTTTCTGCTTCCCTT
CTCCATAAACTGTATGGAAACAAATTGGGACCTTTTCTTGAGCACGCTGAGCATCTTACG
GAGGACG

Homology of Contig U35_47147 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g47930.1	1109	1e-127	protein\|expressed protein
Brachypodium v1_2	Bradi1g20630.1	1110	1e-134
Arabidopsis v10	AT5G06970.1	1101	3e-80	Protein of unknown function (DUF810) \| chr5:2158431-2166004 REVERSE LENGTH=1101