barSeed - Barley Seed Development Database

Probe CUST_18966_PI390587928

Source Contig U35_47148

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_18966_PI390587928	Hv_44K_v2	AAAGATTTGGCTGCAAAATCAGCAGATGTTGGGTCTATCACGCCTAATATTCAGAGGCCG	496	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_3545.7	2743	2e-24	637 - 696	100	60 / 60	plus	ABC21909
MLOC	MLOC_3545.8	2722	2e-24	602 - 661	100	60 / 60	plus	ABC21909
MLOC	MLOC_3545.6	2905	2e-24	691 - 750	100	60 / 60	plus	ABC21909
MLOC	MLOC_3545.4	2942	2e-24	762 - 821	100	60 / 60	plus	ABC21909
JLOC1	JLOC1_2132.2	2932	8e-25	743 - 802	100	60 / 60	plus
Harvest21	ABC47977	648	3e-25	497 - 556	100	60 / 60	plus
Harvest35	U35_47148	648	3e-25	497 - 556	100	60 / 60	plus

Contig Sequence (648 bp)

>U35_47148 648 Hv_44K_v2
GCCGAAGAGAGAAACCAGAGAGAGGAAAACCCTATCTCGCGCGCTCCTAACCCTAGAATT
CCGCCCTTCCATGGCGGCGGAGACCAAACCCTCCTCCGGGACGGAGGAGGCGGCGGCGGC
CGTGCAGTTCCAGGTGGATGAGGCGTACGAGTACCGCGCGCCCAAGTACTTCGACTTCGT
CGTCGACGAGACGGAGGACGACATCCGCGCCGCCGAGCGCTGGTTCCAGGCCGGCGCCAG
CCACGCGCCCTCGCCGTTCGCTCCGAGGATCAAGGAGTCGAGAGCGGAGGTCAAGATCGA
CGCACTCTGCGATTTCGCGGACGCGGAGGACCCGGCTCCATCTCCAAAGAACCAAGCCAT
GGAGGAGGCAGCAGTCAACCTCACAAATCAGGCAGGGGATGTCGCTGGCACGCCTGCTTG
TCCTGACGCCATGTCAGAGTCGCCGCCAACAGAAGACAAGGAGGAGTCACCCAAGCCTTT
CGAGTTTCCCGTGTCCAAAGATTTGGCTGCAAAATCAGCAGATGTTGGGTCTATCACGCC
TAATATTCAGAGGCCGCCTCCACCTGCCGAAGTTACCACTGCTAGGACCACTCGTGCCAA
GTCAACAGTGAAGGCTGAAGCGTGCACTCCCAAAGTGCAGGGGAGCTC

Homology of Contig U35_47148 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi1g26680.1	668	8e-56
Arabidopsis v10	None